Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   INP70_RS16430 Genome accession   NZ_CP063421
Coordinates   501375..502469 (-) Length   364 a.a.
NCBI ID   WP_000823682.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 496375..507469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS16410 - 496723..497121 (+) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -
  INP70_RS16415 - 497365..497883 (+) 519 WP_000914961.1 hypothetical protein -
  INP70_RS16420 - 498127..498792 (+) 666 WP_000268198.1 flagellar brake protein -
  INP70_RS16425 luxQ 498784..501357 (-) 2574 WP_001026309.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  INP70_RS16430 luxP 501375..502469 (-) 1095 WP_000823682.1 substrate-binding domain-containing protein Regulator
  INP70_RS16435 traF 502681..503841 (-) 1161 WP_193836700.1 conjugal transfer protein TraF -
  INP70_RS16440 - 503943..504248 (-) 306 WP_000448831.1 GIY-YIG nuclease family protein -
  INP70_RS16445 - 504248..504898 (-) 651 WP_001025625.1 YceH family protein -
  INP70_RS16450 - 504940..505137 (-) 198 WP_001246071.1 hypothetical protein -
  INP70_RS16455 - 505325..505645 (+) 321 WP_001089529.1 DUF496 family protein -
  INP70_RS16460 - 506058..506309 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41209.90 Da        Isoelectric Point: 6.7045

>NTDB_id=495549 INP70_RS16430 WP_000823682.1 501375..502469(-) (luxP) [Vibrio cholerae strain VC_hf7]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSTLTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=495549 INP70_RS16430 WP_000823682.1 501375..502469(-) (luxP) [Vibrio cholerae strain VC_hf7]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTACGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAATGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACTCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGAATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

99.176

100

0.992