Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   INP70_RS10970 Genome accession   NZ_CP063420
Coordinates   2444375..2444893 (-) Length   172 a.a.
NCBI ID   WP_001130229.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439375..2449893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS10945 rimM 2439484..2440038 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  INP70_RS10950 rpsP 2440066..2440314 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  INP70_RS10955 ffh 2440550..2441935 (-) 1386 WP_000462715.1 signal recognition particle protein -
  INP70_RS10960 - 2442148..2442942 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  INP70_RS10965 - 2443025..2444305 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  INP70_RS10970 luxS 2444375..2444893 (-) 519 WP_001130229.1 S-ribosylhomocysteine lyase Regulator
  INP70_RS10975 gshA 2444942..2446516 (-) 1575 WP_000032616.1 glutamate--cysteine ligase -
  INP70_RS10980 - 2446628..2449483 (-) 2856 WP_001233042.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=495533 INP70_RS10970 WP_001130229.1 2444375..2444893(-) (luxS) [Vibrio cholerae strain VC_hf7]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=495533 INP70_RS10970 WP_001130229.1 2444375..2444893(-) (luxS) [Vibrio cholerae strain VC_hf7]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994