Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   INP70_RS07970 Genome accession   NZ_CP063420
Coordinates   1770374..1771798 (+) Length   474 a.a.
NCBI ID   WP_001183691.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765374..1776798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS07950 - 1765643..1766428 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  INP70_RS07955 cobT 1766428..1767453 (-) 1026 WP_000887082.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  INP70_RS07960 msrB 1768064..1768510 (-) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  INP70_RS07965 - 1768857..1770230 (+) 1374 WP_000117950.1 L-cystine transporter -
  INP70_RS07970 sbcB 1770374..1771798 (+) 1425 WP_001183691.1 exodeoxyribonuclease I Machinery gene
  INP70_RS07975 - 1771830..1772204 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  INP70_RS07980 - 1772195..1772869 (+) 675 WP_000266239.1 LrgB family protein -
  INP70_RS07985 cdd 1773039..1773926 (+) 888 WP_001245904.1 cytidine deaminase -
  INP70_RS07990 - 1774085..1774960 (+) 876 WP_000462872.1 AEC family transporter -
  INP70_RS07995 purT 1775114..1776289 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54486.87 Da        Isoelectric Point: 6.0792

>NTDB_id=495525 INP70_RS07970 WP_001183691.1 1770374..1771798(+) (sbcB) [Vibrio cholerae strain VC_hf7]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPKPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=495525 INP70_RS07970 WP_001183691.1 1770374..1771798(+) (sbcB) [Vibrio cholerae strain VC_hf7]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTAA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAGCCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTAGTGCATGAGCATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987