Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KIM05_RS03505 Genome accession   NZ_CP074928
Coordinates   725424..725900 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain 07_3636     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 720424..730900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM05_RS03480 (KIM05_03430) - 720591..723107 (+) 2517 WP_023442299.1 hypothetical protein -
  KIM05_RS03485 (KIM05_03435) - 723183..723638 (+) 456 WP_000581504.1 IrmA family protein -
  KIM05_RS03490 (KIM05_03440) - 723717..723950 (+) 234 WP_001119729.1 DUF905 family protein -
  KIM05_RS03495 (KIM05_03445) - 724050..724868 (+) 819 WP_001234622.1 DUF932 domain-containing protein -
  KIM05_RS03500 (KIM05_03450) - 724923..725408 (+) 486 WP_000849588.1 antirestriction protein -
  KIM05_RS03505 (KIM05_03455) radC 725424..725900 (+) 477 WP_001186774.1 JAB domain-containing protein Machinery gene
  KIM05_RS03510 (KIM05_03460) - 725963..726184 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  KIM05_RS03515 (KIM05_03465) - 726347..726715 (+) 369 WP_001315620.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KIM05_RS03520 (KIM05_03470) - 726805..727179 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  KIM05_RS03525 (KIM05_03475) - 727176..727664 (+) 489 WP_000777547.1 DUF5983 family protein -
  KIM05_RS03530 (KIM05_03480) - 727676..727873 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  KIM05_RS03535 (KIM05_03485) - 727958..728107 (+) 150 Protein_687 restriction endonuclease subunit M -
  KIM05_RS03540 - 728083..728211 (+) 129 Protein_688 transcriptional regulator -
  KIM05_RS03545 - 728869..729018 (-) 150 Protein_689 restriction endonuclease -
  KIM05_RS03550 (KIM05_03490) - 729155..729805 (+) 651 WP_001037966.1 HNH endonuclease -
  KIM05_RS03555 - 729805..729894 (+) 90 WP_418267963.1 hypothetical protein -
  KIM05_RS03560 - 730179..730793 (-) 615 Protein_692 sialate O-acetylesterase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=495508 KIM05_RS03505 WP_001186774.1 725424..725900(+) (radC) [Escherichia coli strain 07_3636]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=495508 KIM05_RS03505 WP_001186774.1 725424..725900(+) (radC) [Escherichia coli strain 07_3636]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399