Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IMI45_RS19215 Genome accession   NZ_CP063414
Coordinates   3767653..3769026 (-) Length   457 a.a.
NCBI ID   WP_003247506.1    Uniprot ID   A0AB38QYZ3
Organism   Parageobacillus thermoglucosidasius strain 23.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3762653..3774026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMI45_RS19190 (IMI45_18995) cysE 3762658..3763326 (-) 669 WP_003247516.1 serine O-acetyltransferase -
  IMI45_RS19195 (IMI45_19000) gltX 3763675..3765135 (-) 1461 WP_003247514.1 glutamate--tRNA ligase -
  IMI45_RS19200 (IMI45_19005) ispF 3765243..3765719 (-) 477 WP_003247512.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IMI45_RS19205 (IMI45_19010) ispD 3765737..3766423 (-) 687 WP_013399824.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IMI45_RS19210 (IMI45_19015) - 3766447..3767541 (-) 1095 WP_003247508.1 PIN/TRAM domain-containing protein -
  IMI45_RS19215 (IMI45_19020) radA 3767653..3769026 (-) 1374 WP_003247506.1 DNA repair protein RadA Machinery gene
  IMI45_RS19220 (IMI45_19025) clpC 3769115..3771550 (-) 2436 WP_035502596.1 ATP-dependent protease ATP-binding subunit ClpC -
  IMI45_RS19225 (IMI45_19030) - 3771557..3772639 (-) 1083 WP_256833650.1 protein arginine kinase -
  IMI45_RS19230 (IMI45_19035) - 3772644..3773192 (-) 549 WP_125010800.1 UvrB/UvrC motif-containing protein -
  IMI45_RS19235 (IMI45_19040) - 3773207..3773668 (-) 462 WP_003247497.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49791.39 Da        Isoelectric Point: 7.1221

>NTDB_id=495494 IMI45_RS19215 WP_003247506.1 3767653..3769026(-) (radA) [Parageobacillus thermoglucosidasius strain 23.6]
MGKKKTKFVCQECGYESAKWLGRCPGCNTWNSMVEEIERTKPATKGVFVHSASDIISKPVPITTVTATQEPRIQTGISEF
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSAQLAALQHKVLYISGEESVKQTKLRADRLHVASDQLYVLAETDLEYIV
EAIETIHPVCVVIDSIQTIYRADIASAPGSVSQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPRILEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMRESGLVEVENPSEVFLEERSRGAAGSTVVAAMEGTRPVLVEIQALVSPTSF
GNPRRMATGIDHNRVSLLMAVLEKRSGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDQPTNPHDVIIGEVGLT
GEVRRVSRIEQRVQEAVKLGFSRMIIPKNNLAGWNPPEHITVIGVSHITEALEHTLQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=495494 IMI45_RS19215 WP_003247506.1 3767653..3769026(-) (radA) [Parageobacillus thermoglucosidasius strain 23.6]
ATGGGAAAAAAGAAAACGAAGTTTGTTTGTCAAGAATGCGGTTACGAGTCAGCGAAGTGGCTTGGAAGATGTCCGGGATG
CAATACATGGAATTCGATGGTTGAGGAAATTGAGCGGACAAAGCCGGCAACAAAAGGAGTGTTTGTTCACTCTGCTTCTG
ATATCATCTCGAAACCAGTGCCGATTACTACAGTGACAGCAACGCAAGAGCCGCGCATACAAACGGGTATTTCTGAGTTT
AACCGCGTATTAGGCGGGGGGATTGTGAAAGGTTCGCTCGTGTTAATCGGCGGTGATCCGGGGATTGGAAAATCGACGCT
TCTATTGCAAGTTTCTGCGCAACTTGCCGCTTTGCAGCATAAAGTATTATATATATCCGGCGAGGAATCGGTAAAACAAA
CGAAATTGCGCGCTGACCGCCTTCATGTTGCTTCTGACCAGCTGTATGTATTAGCGGAGACAGATTTGGAATATATTGTA
GAAGCAATAGAAACCATTCACCCTGTTTGTGTCGTAATCGATTCGATCCAAACGATTTACCGCGCGGATATTGCCTCCGC
ACCCGGAAGTGTCTCGCAAGTTCGTGAATGCACAGCGGAACTGATGAAAATCGCCAAAACAAAAGGAATCGCCATTTTTA
TTGTCGGACATGTAACGAAGGAAGGAGCGATTGCCGGACCAAGAATTTTAGAGCATATGGTGGATACCGTCCTTTATTTT
GAAGGCGAACGACATCATACGTACCGCATTTTGCGGGCGGTGAAAAACCGTTTTGGCTCCACCAATGAAATTGGTATTTT
CGAAATGAGAGAATCGGGGCTTGTTGAGGTCGAAAATCCATCAGAGGTGTTTTTAGAGGAGCGTTCCCGCGGCGCAGCAG
GTTCAACTGTCGTCGCGGCAATGGAAGGGACCCGTCCTGTATTAGTCGAAATTCAAGCATTAGTCTCGCCAACGAGTTTC
GGTAATCCGCGGCGGATGGCGACAGGGATCGATCATAACCGTGTTTCTTTATTGATGGCTGTATTGGAAAAAAGATCCGG
TCTGCTTTTGCAAAATCAGGATGCTTATTTAAAAGTGGCAGGAGGAGTAAAGTTAGATGAACCGGCGATTGATTTGGCAA
TTGCCGTGAGCATTGCCTCAAGTTTTCGCGATCAGCCTACCAATCCGCATGATGTCATTATTGGCGAAGTTGGTTTGACA
GGAGAAGTGCGCCGTGTTTCCCGTATTGAACAACGGGTGCAGGAAGCTGTAAAGTTAGGATTTTCCCGCATGATTATTCC
TAAAAACAATTTAGCCGGATGGAACCCGCCGGAACATATCACCGTTATCGGCGTGTCCCATATCACCGAAGCGCTGGAGC
ATACGTTGCAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.492

100

0.755
  radA Streptococcus mitis NCTC 12261

64.254

99.781

0.641
  radA Streptococcus mitis SK321

64.254

99.781

0.641
  radA Streptococcus pneumoniae Rx1

64.035

99.781

0.639
  radA Streptococcus pneumoniae D39

64.035

99.781

0.639
  radA Streptococcus pneumoniae R6

64.035

99.781

0.639
  radA Streptococcus pneumoniae TIGR4

64.035

99.781

0.639