Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IMI45_RS13685 Genome accession   NZ_CP063414
Coordinates   2692621..2694342 (-) Length   573 a.a.
NCBI ID   WP_256832773.1    Uniprot ID   A0AB38QV68
Organism   Parageobacillus thermoglucosidasius strain 23.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2687621..2699342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMI45_RS13655 (IMI45_13465) - 2687717..2687965 (+) 249 WP_003249290.1 DUF2627 domain-containing protein -
  IMI45_RS13660 (IMI45_13470) - 2687974..2688708 (-) 735 WP_256832766.1 glycerophosphodiester phosphodiesterase -
  IMI45_RS13665 (IMI45_13475) - 2688820..2688966 (+) 147 WP_256832768.1 YycC family protein -
  IMI45_RS13670 (IMI45_13480) - 2689642..2689815 (-) 174 WP_256832769.1 hypothetical protein -
  IMI45_RS13675 (IMI45_13485) spo0A 2690107..2690886 (-) 780 WP_003249276.1 sporulation transcription factor Spo0A -
  IMI45_RS13680 (IMI45_13490) spoIVB 2691201..2692493 (-) 1293 WP_013400416.1 SpoIVB peptidase -
  IMI45_RS13685 (IMI45_13495) recN 2692621..2694342 (-) 1722 WP_256832773.1 DNA repair protein RecN Machinery gene
  IMI45_RS13690 (IMI45_13500) ahrC 2694362..2694811 (-) 450 WP_003249270.1 transcriptional regulator AhrC/ArgR -
  IMI45_RS13695 (IMI45_13505) - 2694866..2695696 (-) 831 WP_125009502.1 TlyA family RNA methyltransferase -
  IMI45_RS13700 (IMI45_13510) dxs 2695700..2697592 (-) 1893 WP_003249266.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IMI45_RS13705 (IMI45_13515) - 2697809..2698702 (-) 894 WP_125009501.1 polyprenyl synthetase family protein -
  IMI45_RS13710 (IMI45_13520) - 2698706..2698939 (-) 234 WP_003249261.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64690.84 Da        Isoelectric Point: 4.8502

>NTDB_id=495476 IMI45_RS13685 WP_256832773.1 2692621..2694342(-) (recN) [Parageobacillus thermoglucosidasius strain 23.6]
MLAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRGSAEFVRYGEEKAEIEGLFLLDNENHPCYDK
CAEVGIDVSEGMVVLRREIFANGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEYGGAEIAAAL
EEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EHRGLDWIGLAMSHLEDVTSISPALKEVYETIANSYYLLEDITYKLSDELEQLEYDPARLDFIESRLSEIHQLKRKYGAT
IEEILQYAEKIAEEIDELQHRETHIHELQKELKSVTEDLLIEAKNVTNVRQKYAKMLINHIHQELKDLYMEKTQFDIVFT
KREGTLDAPLLDGVPVNFHEDGVDEVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGIS
GRVAQAIAEKIYRVSIGSQVLCISHLPQVAAMADTHLFIAKETDGNRTRTSVKTLSDEEKVKEIGRMISGVEITELTKQH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=495476 IMI45_RS13685 WP_256832773.1 2692621..2694342(-) (recN) [Parageobacillus thermoglucosidasius strain 23.6]
TTGCTTGCGGAATTATCCATAAAAAATTTTGCGATTATTGAATCGTTGTCGGTTTCGTTTGACAAAGGGCTGACCGTGCT
GACCGGGGAAACGGGAGCGGGGAAGTCGATTATTATTGACGCCATCCAGCTGCTGATCGGCGGGCGCGGTTCGGCGGAGT
TTGTCCGCTATGGGGAAGAAAAGGCGGAAATAGAAGGGCTTTTTTTATTGGATAATGAAAACCATCCATGCTATGACAAA
TGTGCGGAAGTCGGCATCGATGTTAGCGAAGGCATGGTTGTTTTGCGTCGCGAAATTTTCGCGAATGGAAAAAGCGTGTG
CCGCGTCAATGGAAAATTAGTGACAACAGCGATATTGCGTGATATCGGTTCAACGCTTGTCGATATTCACGGCCAGCATG
AACACCAGGAATTGATGGATCCGTCGCGCCATCTTCCGCTGCTCGATGAATATGGGGGAGCGGAAATTGCCGCCGCGCTG
GAAGAATACCGGGCTGTTTATGAGAAATATGAGCAATTGCGGAAGAAATTGAAAAAGCTGAATGAAAATGAACAGCAAAT
GGCCCATCGCCTTGATTTATTAACATTTCAGCTCGATGAAATTCAAAAAGCAAATTTGCAAGTAAACGAAGATGAACAAT
TAATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAAATTTATGAGGCGCTTAAACATAGCTATGAGGCGTTATCCGGT
GAACACCGCGGGCTTGACTGGATTGGTCTGGCCATGAGCCATTTAGAAGATGTCACCTCTATCAGCCCGGCATTGAAAGA
AGTGTACGAAACGATTGCGAATAGTTATTATTTATTAGAGGATATTACGTATAAATTGAGCGATGAACTTGAACAATTAG
AGTATGACCCGGCCCGACTCGATTTTATTGAAAGCCGTCTTAGCGAAATCCATCAGTTAAAACGGAAATATGGAGCGACC
ATCGAAGAGATTTTGCAATATGCTGAAAAAATTGCGGAAGAAATCGATGAACTCCAACATCGCGAAACCCATATCCATGA
ACTGCAAAAAGAATTGAAATCGGTGACGGAAGATTTATTAATCGAAGCGAAAAACGTGACGAACGTCCGCCAAAAATACG
CAAAAATGTTAATTAACCATATTCATCAAGAATTAAAAGATCTATACATGGAAAAAACGCAATTTGATATCGTATTTACG
AAAAGAGAAGGAACGCTCGATGCGCCGCTGCTGGACGGCGTGCCTGTAAATTTTCATGAAGATGGTGTCGATGAGGTAGA
ATTTTACATTTCTACCAACGTGGGCGAACCGTTAAAACCGCTGGCGAAAATTGCTTCCGGCGGCGAATTGTCACGTATTA
TGCTCGCGTTAAAAAGCATATTTTCGAAACATCAAGGCGTTACGTCCATTATTTTTGATGAAGTCGATACAGGCATCAGC
GGCCGGGTTGCGCAGGCGATTGCTGAAAAAATTTACCGCGTCTCGATTGGCTCGCAAGTGCTTTGTATTTCCCATTTGCC
GCAAGTAGCGGCGATGGCGGATACGCATTTGTTTATTGCAAAGGAAACGGACGGAAATCGGACAAGAACATCAGTAAAAA
CATTATCGGACGAAGAAAAAGTAAAAGAAATCGGCCGGATGATTTCCGGGGTGGAAATTACAGAACTAACAAAGCAACAT
GCAAAAGAGCTGCTGGAGCTAGCGGCAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.937

100

0.64