Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   IM738_RS24290 Genome accession   NZ_CP063400
Coordinates   5101135..5102778 (+) Length   547 a.a.
NCBI ID   WP_236963580.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SL48     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5096135..5107778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM738_RS24265 (IM738_24225) argS 5096357..5098054 (+) 1698 WP_236963575.1 arginine--tRNA ligase -
  IM738_RS24270 (IM738_24230) - 5098068..5098748 (+) 681 WP_236963576.1 SPOR domain-containing protein -
  IM738_RS24275 (IM738_24235) - 5098824..5099462 (+) 639 WP_236963577.1 thiol:disulfide interchange protein DsbA/DsbL -
  IM738_RS24280 (IM738_24240) lptA 5099599..5100243 (+) 645 WP_236963578.1 lipopolysaccharide transport periplasmic protein LptA -
  IM738_RS24285 (IM738_24245) lptB 5100273..5101022 (+) 750 WP_236963579.1 LPS export ABC transporter ATP-binding protein -
  IM738_RS24290 (IM738_24250) rpoN/rpoN1 5101135..5102778 (+) 1644 WP_236963580.1 RNA polymerase factor sigma-54 Machinery gene
  IM738_RS24295 (IM738_24255) - 5102923..5104257 (+) 1335 WP_236963581.1 THUMP domain-containing protein -
  IM738_RS24300 (IM738_24260) - 5104254..5104709 (+) 456 WP_236963582.1 putative toxin-antitoxin system toxin component, PIN family -
  IM738_RS24305 (IM738_24265) - 5104706..5105098 (+) 393 WP_236963583.1 glutathione S-transferase N-terminal domain-containing protein -
  IM738_RS24310 (IM738_24270) - 5105115..5105369 (-) 255 WP_236963584.1 hypothetical protein -
  IM738_RS24315 (IM738_24275) - 5105366..5105827 (-) 462 WP_236963585.1 helix-turn-helix domain-containing protein -
  IM738_RS24320 (IM738_24280) - 5105917..5106771 (+) 855 WP_236963586.1 SDR family oxidoreductase -
  IM738_RS24325 (IM738_24285) - 5106879..5107469 (-) 591 Protein_4827 phage integrase N-terminal SAM-like domain-containing protein -

Sequence

Protein


Download         Length: 547 a.a.        Molecular weight: 60273.71 Da        Isoelectric Point: 4.5794

>NTDB_id=495442 IM738_RS24290 WP_236963580.1 5101135..5102778(+) (rpoN/rpoN1) [Hydrogenophaga sp. SL48]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERGEETAEREDFGLAQTDAPVSVAEQIADAASP
VDEFPVAATEFDSRVSSTDSAPSESAPADDLESRLEGASPVEESWEGDGTVEMAPDDSEWGGDAPARNNSSSGEDDETAS
AADLARVPVSLQDHLHEQARCLRLSDEDRAALYFLIESLNDDGYLEDRMTDLARAWWQLSASPVSHAEPAFEVIEAIEGR
LNTALQWLQQMEPAGVGARDLGECLRLQILEMRNSPAARAALAICGQPLELMAKRDVKRLCGLCSLDDETVRSGLSLIAR
LEPKPGRRFVDVERNVVVPDVIVTRAGRGFKVSLNAEVMPRLRVHDVYANAMRGNRGGRDNGGEAGHAAMQQRLQEARWF
IKNIQQRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMSTPFGTYELKYFFGSSLGT
ETGGNASSTAVRALLKQFIAAEEAAKPLSDNQLSDLLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1644 bp        

>NTDB_id=495442 IM738_RS24290 WP_236963580.1 5101135..5102778(+) (rpoN/rpoN1) [Hydrogenophaga sp. SL48]
GTGAAACAAGGTCTGTCGCTGCGCGTCTCGCAGCACCTCGCACTCACCCCCCAGCTGCAGCAGTCGATCCGGCTGCTTCA
GCTGTCCACGCTGGAGATGGCCCAGGAGGTCGAGCAGATGCTCGACGAAAACCCGTTCCTGGAACGCGGCGAAGAAACGG
CCGAGCGCGAAGACTTTGGCCTGGCGCAGACCGATGCGCCGGTCAGCGTGGCCGAGCAGATCGCCGACGCGGCCTCGCCC
GTGGATGAATTCCCGGTGGCTGCCACCGAGTTCGACAGCCGCGTGTCCAGCACCGACAGCGCGCCGTCCGAGAGCGCACC
CGCCGACGATCTGGAAAGCCGGCTCGAAGGCGCCAGCCCGGTCGAAGAGAGCTGGGAAGGCGACGGCACCGTCGAAATGG
CGCCCGATGACAGCGAGTGGGGCGGCGACGCCCCGGCGCGCAACAACAGCTCCTCCGGCGAAGACGACGAAACCGCCAGC
GCGGCCGATCTGGCGCGTGTGCCCGTGAGCCTGCAGGACCACCTGCACGAGCAGGCGCGCTGCCTGCGCCTCTCCGACGA
AGACCGCGCCGCCCTGTATTTCCTGATCGAGTCGCTCAACGACGACGGGTACCTCGAAGACCGCATGACCGACCTGGCGC
GGGCCTGGTGGCAGCTGTCGGCCTCGCCCGTGTCCCACGCCGAGCCGGCGTTCGAGGTCATCGAGGCCATTGAGGGCCGC
CTCAACACCGCGCTGCAATGGCTGCAGCAGATGGAGCCTGCCGGTGTCGGCGCGCGCGACCTGGGCGAATGCCTGCGCCT
GCAGATCCTGGAGATGCGCAATTCGCCGGCCGCCCGCGCGGCGCTCGCCATCTGTGGCCAGCCGCTGGAGCTGATGGCCA
AGCGCGATGTGAAGCGCCTTTGCGGCCTCTGCAGCCTGGACGACGAGACGGTGCGCTCGGGGCTGTCGCTGATTGCACGG
CTGGAACCCAAGCCGGGCCGCCGCTTCGTGGACGTGGAGCGCAACGTGGTCGTGCCCGACGTGATCGTCACGCGCGCCGG
TCGCGGCTTCAAGGTGTCGCTCAATGCCGAGGTCATGCCGCGCCTGCGCGTGCACGACGTCTACGCCAACGCCATGCGCG
GCAACCGCGGGGGCCGTGACAACGGCGGCGAGGCCGGTCACGCTGCCATGCAGCAGCGCCTGCAGGAAGCGCGCTGGTTC
ATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTCTCCAGCGCCATCGTCGAGCGCCAGCGCAACTTCTTCAT
GCACGGCGAACTCGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTGGGCCTGCACGAATCCACCATCAGCC
GCGTGACCACCGCCAAGTACATGTCCACGCCGTTCGGCACCTACGAGCTGAAGTATTTCTTCGGCTCCAGCCTCGGCACC
GAGACCGGTGGCAACGCGTCGAGCACCGCGGTGCGTGCGCTGCTCAAGCAGTTCATCGCGGCCGAAGAGGCGGCCAAGCC
GCTCTCCGACAACCAGCTTTCCGACCTGCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCG
AAGCGCTGCGCATCGCGCCGGCGAATTTGCGCAAGGCGCTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(165-368)

Sigma-54, DNA binding domain (Sigma54_DBD)

(389-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.82

100

0.506