Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IM739_RS09550 Genome accession   NZ_CP063397
Coordinates   2031749..2033152 (-) Length   467 a.a.
NCBI ID   WP_237370921.1    Uniprot ID   -
Organism   Rhizobium sp. SL42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2026749..2038152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM739_RS09530 (IM739_09515) - 2027688..2028575 (-) 888 WP_237370917.1 DMT family transporter -
  IM739_RS09535 (IM739_09520) - 2028652..2029392 (-) 741 WP_237370918.1 SDR family NAD(P)-dependent oxidoreductase -
  IM739_RS09540 (IM739_09525) purF 2029416..2030909 (-) 1494 WP_237370919.1 amidophosphoribosyltransferase -
  IM739_RS09545 (IM739_09530) - 2031036..2031659 (-) 624 WP_237370920.1 CvpA family protein -
  IM739_RS09550 (IM739_09535) radA 2031749..2033152 (-) 1404 WP_237370921.1 DNA repair protein RadA Machinery gene
  IM739_RS09555 (IM739_09540) - 2033163..2033504 (-) 342 WP_237367592.1 type II toxin-antitoxin system RelE/ParE family toxin -
  IM739_RS09560 (IM739_09545) - 2033470..2033715 (-) 246 WP_237367593.1 type II toxin-antitoxin system ParD family antitoxin -
  IM739_RS09565 (IM739_09550) alr 2033790..2034956 (-) 1167 WP_237367594.1 alanine racemase -
  IM739_RS09570 (IM739_09555) - 2035047..2035904 (+) 858 WP_237367595.1 AraC family transcriptional regulator -
  IM739_RS09575 (IM739_09560) - 2035968..2036669 (+) 702 WP_237367596.1 AzlC family ABC transporter permease -
  IM739_RS09580 (IM739_09565) - 2036666..2036968 (+) 303 WP_237367597.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49147.14 Da        Isoelectric Point: 6.7649

>NTDB_id=495420 IM739_RS09550 WP_237370921.1 2031749..2033152(-) (radA) [Rhizobium sp. SL42]
MAKAKTQFICQNCGTVHSRWAGKCDGCGEWNTIVEEDPMGGIGGGPGKTPKKGRAVTLTALSGEIEEAPRIPTGMAELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRKGHRVIYVSGEEAVAQVRLRAQRLGAAETDVLLAAETNVEDILAT
ISEGKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKAPGAAVFAGMEGTRPILVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVRLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEVSLSG
AVRPVSHTAQRLKEAEKLGFSAAVLPAASAELPKGSTGKWREVDSLPDLVARIAGSRLKARNDQEDG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=495420 IM739_RS09550 WP_237370921.1 2031749..2033152(-) (radA) [Rhizobium sp. SL42]
ATGGCAAAAGCAAAAACTCAATTCATCTGCCAGAACTGCGGCACCGTTCACAGCCGCTGGGCCGGAAAATGCGACGGTTG
CGGCGAATGGAATACCATCGTCGAGGAAGATCCGATGGGCGGGATCGGCGGCGGGCCTGGCAAGACGCCGAAAAAGGGCC
GCGCGGTAACGCTGACGGCGCTTTCGGGCGAGATCGAGGAAGCCCCCAGAATTCCCACCGGAATGGCGGAGCTTGACCGG
GCAACCGGCGGCGGCTTTGTCCGTGGTTCGGCCGTCCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGAT
GCAGGCTGCCGCCGCCCTTTCGCGCAAGGGCCACCGGGTGATCTATGTTTCGGGCGAAGAAGCCGTGGCACAGGTTCGCC
TGCGGGCGCAAAGGCTTGGCGCGGCCGAAACGGATGTGCTGCTGGCCGCCGAAACCAATGTCGAGGATATCCTGGCAACG
ATCTCGGAGGGCAAGCGCCCGGACCTGGTGATCATCGATTCGATCCAGACCCTGTGGAGCGACACGGCCGACAGCGCACC
CGGCACCGTCACGCAGGTGCGGACCGGCGTTCAGGCAATGATCCGCTTTGCCAAGCAGACCGGCGCGACCATGGTGCTGG
TTGGCCACGTCACCAAGGAGGGCCAGATCGCCGGCCCGCGTGTCGTCGAGCACATGGTCGATGCGGTTCTCTATTTCGAA
GGCGACCGCGGCCACCACTACCGCATCCTGCGCACGGTGAAGAACCGTTTCGGGCCGACAGACGAGATTGGTGTGTTCGA
AATGTCGGACAAGGGTCTGCGCGAAGTGGCCAATCCGTCGGAACTGTTTCTTGGCGAACGCAATGAAAAAGCTCCGGGGG
CAGCGGTGTTTGCCGGCATGGAGGGCACGCGCCCGATCCTGGTCGAAGTCCAGGCGCTGGTGGCGGCAACCTCGCTCGGC
ACGCCGCGCCGCGCCGTCGTCGGATGGGATTCGAGCCGGTTGGCGATGATCCTGGCCGTGCTTGAGGCCCATTGCGGCGT
CAGGCTCGGCCAGCACGATGTCTATCTCAACGTCGCCGGCGGCTATCGGATTTCGGAACCGGCCGCCGACATGGCAATTG
CATCGGCGTTGGTTTCCTCGCTTGCCGGTCTTGCCCTTCCCGCCGATTGCGTCTATTTCGGCGAGGTCAGCCTGTCAGGG
GCGGTGCGACCGGTTTCGCATACGGCCCAACGGTTGAAAGAGGCGGAAAAGCTTGGTTTCTCCGCTGCGGTATTGCCGGC
TGCCTCGGCCGAACTGCCTAAGGGTTCGACGGGCAAATGGAGGGAAGTGGACAGCCTTCCCGATCTTGTGGCGCGGATCG
CCGGTTCCCGGTTGAAAGCGCGCAACGATCAGGAGGATGGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.334

96.146

0.484
  radA Streptococcus pneumoniae Rx1

46.833

94.647

0.443
  radA Streptococcus pneumoniae D39

46.833

94.647

0.443
  radA Streptococcus pneumoniae R6

46.833

94.647

0.443
  radA Streptococcus pneumoniae TIGR4

46.833

94.647

0.443
  radA Streptococcus mitis SK321

47.005

92.934

0.437
  radA Streptococcus mitis NCTC 12261

46.774

92.934

0.435