Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IPV38_RS25135 Genome accession   NZ_CP063396
Coordinates   5419149..5419706 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST167_d26burn     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5414149..5424706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV38_RS25115 (IPV38_25110) pilR 5415425..5416762 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  IPV38_RS25120 (IPV38_25115) thiO 5416808..5417902 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  IPV38_RS25125 (IPV38_25120) - 5418037..5418546 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  IPV38_RS25130 (IPV38_25125) - 5418652..5419158 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  IPV38_RS25135 (IPV38_25130) pilV 5419149..5419706 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  IPV38_RS25140 (IPV38_25135) pilW 5419703..5420527 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  IPV38_RS25145 (IPV38_25140) pilX 5420524..5421111 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  IPV38_RS25150 (IPV38_25145) pilY1 5421123..5424614 (+) 3492 WP_023086645.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=495409 IPV38_RS25135 WP_003119423.1 5419149..5419706(+) (pilV) [Pseudomonas aeruginosa strain ST167_d26burn]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=495409 IPV38_RS25135 WP_003119423.1 5419149..5419706(+) (pilV) [Pseudomonas aeruginosa strain ST167_d26burn]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995