Detailed information NTG0495405

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IPV38_RS24500
• Genome accession: NZ_CP063396
• Coordinates: 5304035..5304907 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain ST167_d26burn
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5299035..5309907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPV38_RS24485 (IPV38_24480)	-	5300418..5300882 (-)	465	WP_023086642.1	pilin	-
IPV38_RS24490 (IPV38_24485)	pilB	5301113..5302813 (+)	1701	WP_034076731.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IPV38_RS24495 (IPV38_24490)	pilC	5302817..5304034 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
IPV38_RS24500 (IPV38_24495)	pilD	5304035..5304907 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
IPV38_RS24505 (IPV38_24500)	coaE	5304904..5305515 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
IPV38_RS24510 (IPV38_24505)	yacG	5305512..5305712 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
IPV38_RS24515 (IPV38_24510)	-	5305749..5305958 (-)	210	WP_003094660.1	hypothetical protein	-
IPV38_RS24520 (IPV38_24515)	-	5306064..5306753 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
IPV38_RS24525 (IPV38_24520)	-	5306750..5307220 (-)	471	WP_023086643.1	hypothetical protein	-
IPV38_RS24530 (IPV38_24525)	-	5307217..5307642 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
IPV38_RS24535 (IPV38_24530)	-	5307775..5308404 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
IPV38_RS24540 (IPV38_24535)	-	5308401..5308850 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
IPV38_RS24545 (IPV38_24540)	-	5308876..5309046 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=495405 IPV38_RS24500 WP_023084740.1 5304035..5304907(+) (pilD) [Pseudomonas aeruginosa strain ST167_d26burn]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=495405 IPV38_RS24500 WP_023084740.1 5304035..5304907(+) (pilD) [Pseudomonas aeruginosa strain ST167_d26burn]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472