Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM08_RS18745 Genome accession   NZ_CP074914
Coordinates   3571247..3571876 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 08_3323     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3566247..3576876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM08_RS18730 (KIM08_18450) helD 3566489..3568543 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIM08_RS18735 (KIM08_18455) yccF 3568666..3569112 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIM08_RS18740 (KIM08_18460) yccS 3569122..3571284 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KIM08_RS18745 (KIM08_18465) sxy/tfoX 3571247..3571876 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM08_RS18750 (KIM08_18470) sulA 3572095..3572604 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM08_RS18755 (KIM08_18475) ompA 3572961..3574001 (+) 1041 WP_000750416.1 porin OmpA -
  KIM08_RS18760 (KIM08_18480) matP 3574076..3574528 (-) 453 WP_000877167.1 macrodomain Ter protein MatP -
  KIM08_RS18765 (KIM08_18485) ycbZ 3574714..3576474 (+) 1761 WP_000156528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=495293 KIM08_RS18745 WP_000839153.1 3571247..3571876(-) (sxy/tfoX) [Escherichia coli strain 08_3323]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=495293 KIM08_RS18745 WP_000839153.1 3571247..3571876(-) (sxy/tfoX) [Escherichia coli strain 08_3323]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1