Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KIM08_RS09855 Genome accession   NZ_CP074914
Coordinates   1980557..1981984 (-) Length   475 a.a.
NCBI ID   WP_000980547.1    Uniprot ID   -
Organism   Escherichia coli strain 08_3323     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1975557..1986984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM08_RS09825 (KIM08_09705) yeeZ 1975612..1976436 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KIM08_RS09830 (KIM08_09710) yeeY 1976482..1977411 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KIM08_RS09835 (KIM08_09715) yoeI 1977626..1977688 (+) 63 WP_010723108.1 membrane protein YoeI -
  KIM08_RS09840 (KIM08_09720) plaP 1977678..1979036 (+) 1359 WP_096955198.1 putrescine/proton symporter PlaP -
  KIM08_RS09845 (KIM08_09725) tsuA 1979215..1980273 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  KIM08_RS09850 (KIM08_09730) tsuB 1980287..1980514 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KIM08_RS09855 (KIM08_09735) sbcB 1980557..1981984 (-) 1428 WP_000980547.1 exodeoxyribonuclease I Machinery gene
  KIM08_RS09860 (KIM08_09740) dacD 1982193..1983359 (+) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KIM08_RS09865 (KIM08_09745) sbmC 1983477..1983950 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  KIM08_RS09870 (KIM08_09750) - 1984187..1985343 (+) 1157 WP_085948186.1 IS3-like element IS600 family transposase -
  KIM08_RS09875 (KIM08_09755) yeeA 1985415..1986473 (+) 1059 WP_001200887.1 FUSC family protein -
  KIM08_RS09880 (KIM08_09760) tmaR 1986645..1986974 (+) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.83 Da        Isoelectric Point: 5.3498

>NTDB_id=495279 KIM08_RS09855 WP_000980547.1 1980557..1981984(-) (sbcB) [Escherichia coli strain 08_3323]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=495279 KIM08_RS09855 WP_000980547.1 1980557..1981984(-) (sbcB) [Escherichia coli strain 08_3323]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATACCG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579