Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IPV42_RS10265 Genome accession   NZ_CP063392
Coordinates   2208659..2209294 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain ST167_d68blood1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2203659..2214294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV42_RS10250 (IPV42_10265) - 2204365..2205609 (+) 1245 WP_023086056.1 lipoprotein-releasing ABC transporter permease subunit -
  IPV42_RS10255 (IPV42_10270) - 2205697..2206230 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  IPV42_RS10260 (IPV42_10275) comA 2206361..2208586 (+) 2226 WP_009876760.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IPV42_RS10265 (IPV42_10280) exbB 2208659..2209294 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IPV42_RS10270 (IPV42_10285) - 2209291..2209731 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  IPV42_RS10275 (IPV42_10290) lpxK 2209731..2210729 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  IPV42_RS10280 (IPV42_10295) - 2210767..2210952 (+) 186 WP_003091157.1 Trm112 family protein -
  IPV42_RS10285 (IPV42_10300) kdsB 2210952..2211716 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IPV42_RS10290 (IPV42_10305) - 2211716..2212180 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  IPV42_RS10295 (IPV42_10310) murB 2212177..2213196 (+) 1020 WP_009876758.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=495259 IPV42_RS10265 WP_003091163.1 2208659..2209294(+) (exbB) [Pseudomonas aeruginosa strain ST167_d68blood1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=495259 IPV42_RS10265 WP_003091163.1 2208659..2209294(+) (exbB) [Pseudomonas aeruginosa strain ST167_d68blood1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81