Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IPV45_RS25375 Genome accession   NZ_CP063389
Coordinates   5419659..5420216 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain ST1076_d97burn2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5414659..5425216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV45_RS25355 (IPV45_25355) pilR 5415935..5417272 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  IPV45_RS25360 (IPV45_25360) thiO 5417318..5418412 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  IPV45_RS25365 (IPV45_25365) - 5418547..5419056 (+) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  IPV45_RS25370 (IPV45_25370) - 5419162..5419668 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  IPV45_RS25375 (IPV45_25375) pilV 5419659..5420216 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  IPV45_RS25380 (IPV45_25380) pilW 5420213..5421037 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  IPV45_RS25385 (IPV45_25385) pilX 5421034..5421621 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  IPV45_RS25390 (IPV45_25390) pilY1 5421633..5425118 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=495170 IPV45_RS25375 WP_003094697.1 5419659..5420216(+) (pilV) [Pseudomonas aeruginosa strain ST1076_d97burn2]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=495170 IPV45_RS25375 WP_003094697.1 5419659..5420216(+) (pilV) [Pseudomonas aeruginosa strain ST1076_d97burn2]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCAGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978