Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IPV45_RS10565 Genome accession   NZ_CP063389
Coordinates   2259071..2259706 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain ST1076_d97burn2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254071..2264706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV45_RS10550 (IPV45_10550) - 2254780..2256024 (+) 1245 WP_031685632.1 lipoprotein-releasing ABC transporter permease subunit -
  IPV45_RS10555 (IPV45_10555) - 2256109..2256642 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  IPV45_RS10560 (IPV45_10560) comA 2256773..2258998 (+) 2226 WP_023091591.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IPV45_RS10565 (IPV45_10565) exbB 2259071..2259706 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IPV45_RS10570 (IPV45_10570) - 2259703..2260143 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  IPV45_RS10575 (IPV45_10575) lpxK 2260143..2261141 (+) 999 WP_031685634.1 tetraacyldisaccharide 4'-kinase -
  IPV45_RS10580 (IPV45_10580) - 2261179..2261364 (+) 186 WP_003091157.1 Trm112 family protein -
  IPV45_RS10585 (IPV45_10585) kdsB 2261364..2262128 (+) 765 WP_009313830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IPV45_RS10590 (IPV45_10590) - 2262128..2262592 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  IPV45_RS10595 (IPV45_10595) murB 2262589..2263608 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=495155 IPV45_RS10565 WP_003091163.1 2259071..2259706(+) (exbB) [Pseudomonas aeruginosa strain ST1076_d97burn2]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=495155 IPV45_RS10565 WP_003091163.1 2259071..2259706(+) (exbB) [Pseudomonas aeruginosa strain ST1076_d97burn2]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81