Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KIM11_RS18975 Genome accession   NZ_CP074904
Coordinates   3635359..3636786 (+) Length   475 a.a.
NCBI ID   WP_000980547.1    Uniprot ID   -
Organism   Escherichia coli strain 08_4358     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3630359..3641786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM11_RS18945 (KIM11_18645) - 3630528..3630899 (+) 372 WP_001295631.1 IS110 family transposase -
  KIM11_RS18950 - 3631170..3631535 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  KIM11_RS18955 (KIM11_18655) tmaR 3631636..3631965 (-) 330 WP_000450409.1 DUF496 family protein -
  KIM11_RS18960 (KIM11_18660) yeeA 3632137..3633195 (-) 1059 WP_001200887.1 FUSC family protein -
  KIM11_RS18965 (KIM11_18665) sbmC 3633393..3633866 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  KIM11_RS18970 (KIM11_18670) dacD 3633984..3635150 (-) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KIM11_RS18975 (KIM11_18675) sbcB 3635359..3636786 (+) 1428 WP_000980547.1 exodeoxyribonuclease I Machinery gene
  KIM11_RS18980 (KIM11_18680) tsuB 3636829..3637056 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KIM11_RS18985 (KIM11_18685) tsuA 3637070..3638128 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  KIM11_RS18990 (KIM11_18690) plaP 3638307..3639665 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KIM11_RS18995 (KIM11_18695) yoeI 3639655..3639717 (-) 63 WP_010723108.1 membrane protein YoeI -
  KIM11_RS19000 (KIM11_18700) yeeY 3639932..3640861 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KIM11_RS19005 (KIM11_18705) yeeZ 3640907..3641731 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.83 Da        Isoelectric Point: 5.3498

>NTDB_id=495057 KIM11_RS18975 WP_000980547.1 3635359..3636786(+) (sbcB) [Escherichia coli strain 08_4358]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=495057 KIM11_RS18975 WP_000980547.1 3635359..3636786(+) (sbcB) [Escherichia coli strain 08_4358]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATACCG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579