Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SALIVA_RS09550 Genome accession   NC_017595
Coordinates   2097187..2097897 (+) Length   236 a.a.
NCBI ID   WP_014635135.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2092187..2102897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09540 (SALIVA_1951) treC 2093387..2095012 (-) 1626 WP_014635132.1 alpha,alpha-phosphotrehalase -
  SALIVA_RS10855 - 2095080..2095535 (-) 456 Protein_1835 PTS glucose transporter subunit IIA -
  SALIVA_RS10860 (SALIVA_1953) treB 2095870..2097030 (-) 1161 WP_014635134.1 PTS trehalose transporter subunit IIBC -
  SALIVA_RS09550 (SALIVA_1954) treR 2097187..2097897 (+) 711 WP_014635135.1 trehalose operon repressor Regulator
  SALIVA_RS09555 (SALIVA_1955) - 2097951..2098511 (-) 561 WP_014635136.1 TIGR01440 family protein -
  SALIVA_RS10455 (SALIVA_1956) - 2098527..2098865 (-) 339 WP_014635137.1 hypothetical protein -
  SALIVA_RS09560 (SALIVA_1957) - 2098898..2099254 (-) 357 WP_021144704.1 hypothetical protein -
  SALIVA_RS09565 (SALIVA_1958) - 2099534..2100415 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  SALIVA_RS09575 (SALIVA_1960) - 2100838..2102133 (-) 1296 WP_014635139.1 glutamyl-tRNA synthetase -
  SALIVA_RS09580 (SALIVA_1961) rplQ 2102383..2102769 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27355.99 Da        Isoelectric Point: 6.8431

>NTDB_id=49500 SALIVA_RS09550 WP_014635135.1 2097187..2097897(+) (treR) [Streptococcus salivarius JIM8777]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=49500 SALIVA_RS09550 WP_014635135.1 2097187..2097897(+) (treR) [Streptococcus salivarius JIM8777]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTCCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTATCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.851

99.576

0.606

Multiple sequence alignment