Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EKR40_RS07360 Genome accession   NZ_CP063381
Coordinates   1438448..1440139 (+) Length   563 a.a.
NCBI ID   WP_012951592.1    Uniprot ID   A0A3T1RAE5
Organism   Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1433448..1445139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKR40_RS07330 (EKR40_07330) - 1433458..1433685 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  EKR40_RS07335 (EKR40_07335) - 1433688..1434569 (+) 882 WP_003732268.1 polyprenyl synthetase family protein -
  EKR40_RS07340 (EKR40_07340) - 1434768..1434968 (+) 201 WP_003719639.1 cold-shock protein -
  EKR40_RS07345 (EKR40_07345) dxs 1435135..1436964 (+) 1830 WP_003733809.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EKR40_RS07350 (EKR40_07350) - 1436961..1437785 (+) 825 WP_003722492.1 TlyA family RNA methyltransferase -
  EKR40_RS07355 (EKR40_07355) argR 1437976..1438425 (+) 450 WP_003722493.1 transcriptional regulator ArgR -
  EKR40_RS07360 (EKR40_07360) recN 1438448..1440139 (+) 1692 WP_012951592.1 DNA repair protein RecN Machinery gene
  EKR40_RS07365 (EKR40_07365) - 1440268..1441134 (+) 867 WP_012951593.1 phosphate acyltransferase -
  EKR40_RS07370 (EKR40_07370) buk 1441271..1442338 (+) 1068 WP_003722496.1 butyrate kinase -
  EKR40_RS07375 (EKR40_07375) lpdA 1442353..1443780 (+) 1428 WP_012951595.1 dihydrolipoyl dehydrogenase -
  EKR40_RS07380 (EKR40_07380) - 1443805..1444800 (+) 996 WP_003722498.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63538.42 Da        Isoelectric Point: 5.1267

>NTDB_id=494900 EKR40_RS07360 WP_012951592.1 1438448..1440139(+) (recN) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKLAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=494900 EKR40_RS07360 WP_012951592.1 1438448..1440139(+) (recN) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGCATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATTAATGGTAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCTAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACGATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T1RAE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538