Detailed information NTG0494894

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EKR40_RS03300
• Genome accession: NZ_CP063381
• Coordinates: 672233..672712 (+)
• Length: 159 a.a.
• NCBI ID: WP_031694734.1
• Uniprot ID: -
• Organism: Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 667233..677712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKR40_RS03245 (EKR40_03245)	-	667683..668039 (+)	357	WP_023552245.1	hypothetical protein	-
EKR40_RS03250 (EKR40_03250)	-	668036..668452 (+)	417	WP_023552247.1	hypothetical protein	-
EKR40_RS03255 (EKR40_03255)	-	668449..668625 (+)	177	WP_023552249.1	hypothetical protein	-
EKR40_RS03260 (EKR40_03260)	-	668640..669359 (+)	720	WP_023552251.1	DUF2786 domain-containing protein	-
EKR40_RS03265 (EKR40_03265)	-	669363..669665 (+)	303	WP_023552253.1	hypothetical protein	-
EKR40_RS03270 (EKR40_03270)	-	669662..670063 (+)	402	WP_031694732.1	YopX family protein	-
EKR40_RS03275 (EKR40_03275)	-	670060..670545 (+)	486	WP_031694733.1	pentapeptide repeat-containing protein	-
EKR40_RS03280 (EKR40_03280)	-	670542..671003 (+)	462	WP_023552261.1	hypothetical protein	-
EKR40_RS03285 (EKR40_03285)	-	671000..671383 (+)	384	WP_023552263.1	hypothetical protein	-
EKR40_RS03290 (EKR40_03290)	-	671404..671652 (+)	249	WP_023552266.1	ASCH/PUA domain-containing protein	-
EKR40_RS03295 (EKR40_03295)	-	671652..672233 (+)	582	WP_023552268.1	DUF3310 domain-containing protein	-
EKR40_RS03300 (EKR40_03300)	ssbA	672233..672712 (+)	480	WP_031694734.1	single-stranded DNA-binding protein	Machinery gene
EKR40_RS03305 (EKR40_03305)	-	672733..672972 (+)	240	WP_023552274.1	hypothetical protein	-
EKR40_RS03310 (EKR40_03310)	-	672978..673148 (+)	171	WP_023552276.1	hypothetical protein	-
EKR40_RS03315 (EKR40_03315)	-	673219..673737 (+)	519	WP_023552279.1	sigma factor-like helix-turn-helix DNA-binding protein	-
EKR40_RS03320 (EKR40_03320)	-	673734..674276 (+)	543	WP_023552281.1	tyrosine-type recombinase/integrase	-
EKR40_RS03325 (EKR40_03325)	-	674392..674625 (+)	234	WP_126290679.1	hypothetical protein	-
EKR40_RS03330 (EKR40_03330)	-	674896..675222 (+)	327	WP_031694737.1	hypothetical protein	-
EKR40_RS03340 (EKR40_03340)	-	675677..676204 (+)	528	WP_012951321.1	phage terminase small subunit P27 family	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17524.47 Da
• Isoelectric Point: 5.2652

>NTDB_id=494894 EKR40_RS03300 WP_031694734.1 672233..672712(+) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNQGRASTNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=494894 EKR40_RS03300 WP_031694734.1 672233..672712(+) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
ATGATGAATCGTGTAGTGCTTGTAGGTCGATTAACTAAAGACCCTGATTTACGATATACGCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGAAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGACGGTCGCGTACAGACTCGA
AATTACGAAGATAACGACGGTAAACGTGTTTTCGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCAAGGAAGAGCTTCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	61.798	100	0.692
ssb	Latilactobacillus sakei subsp. sakei 23K	54.335	100	0.591
ssbB	Bacillus subtilis subsp. subtilis str. 168	66.038	66.667	0.44
ssb	Neisseria meningitidis MC58	33.333	100	0.365