Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IMY97_RS20895 Genome accession   NZ_CP063380
Coordinates   4610506..4611888 (+) Length   460 a.a.
NCBI ID   WP_103972311.1    Uniprot ID   -
Organism   Pectobacterium versatile strain ECC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4605506..4616888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY97_RS20875 (IMY97_21045) prfC 4605816..4607405 (-) 1590 WP_039481772.1 peptide chain release factor 3 -
  IMY97_RS20880 (IMY97_21050) - 4607699..4608607 (+) 909 WP_103861508.1 hypothetical protein -
  IMY97_RS20885 (IMY97_21055) - 4608656..4609354 (-) 699 WP_010296287.1 YtjB family periplasmic protein -
  IMY97_RS20890 (IMY97_21060) serB 4609511..4610488 (+) 978 WP_095701482.1 phosphoserine phosphatase -
  IMY97_RS20895 (IMY97_21065) radA 4610506..4611888 (+) 1383 WP_103972311.1 DNA repair protein RadA Machinery gene
  IMY97_RS20900 (IMY97_21070) nadR 4612008..4613261 (+) 1254 WP_095701481.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IMY97_RS20905 (IMY97_21075) - 4613258..4613905 (-) 648 WP_109224967.1 5-formyltetrahydrofolate cyclo-ligase -
  IMY97_RS20915 (IMY97_21085) zapA 4614203..4614532 (-) 330 WP_010284667.1 cell division protein ZapA -
  IMY97_RS20920 (IMY97_21090) - 4614725..4615312 (+) 588 WP_103861511.1 YecA family protein -
  IMY97_RS20925 (IMY97_21095) pepP 4615387..4616712 (+) 1326 WP_039493867.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49572.14 Da        Isoelectric Point: 7.4463

>NTDB_id=494882 IMY97_RS20895 WP_103972311.1 4610506..4611888(+) (radA) [Pectobacterium versatile strain ECC15]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=494882 IMY97_RS20895 WP_103972311.1 4610506..4611888(+) (radA) [Pectobacterium versatile strain ECC15]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGCAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGTCTGTGTCACGTTCTGACCGCCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCACACAGACTCAATCTGCCGACCCAAAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAAATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTAACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTTCTCAGCCGTGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAAGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTAGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTATTCGGCGTGAAAAAGCTAGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.637

98.913

0.422
  radA Streptococcus pneumoniae Rx1

42.637

98.913

0.422
  radA Streptococcus pneumoniae D39

42.637

98.913

0.422
  radA Streptococcus pneumoniae R6

42.637

98.913

0.422
  radA Streptococcus pneumoniae TIGR4

42.637

98.913

0.422
  radA Streptococcus mitis SK321

42.637

98.913

0.422