Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IPU21_RS04260 Genome accession   NZ_CP063368
Coordinates   945897..946613 (-) Length   238 a.a.
NCBI ID   WP_019166403.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 245-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 940897..951613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU21_RS04240 (IPU21_04255) - 941083..942168 (-) 1086 WP_212575288.1 YeeE/YedE family protein -
  IPU21_RS04245 (IPU21_04260) - 942402..943349 (+) 948 WP_212575289.1 LacI family DNA-binding transcriptional regulator -
  IPU21_RS04250 (IPU21_04265) - 943405..944892 (+) 1488 WP_212575290.1 sucrose-6-phosphate hydrolase -
  IPU21_RS04255 (IPU21_04270) - 944893..945837 (+) 945 WP_212575291.1 carbohydrate kinase family protein -
  IPU21_RS04260 (IPU21_04275) agrA 945897..946613 (-) 717 WP_019166403.1 quorum-sensing response regulator AgrA Regulator
  IPU21_RS04265 (IPU21_04280) agrC 946627..947919 (-) 1293 WP_096606363.1 quorum-sensing sensor histidine kinase AgrC -
  IPU21_RS04270 (IPU21_04285) agrD 947943..948080 (-) 138 WP_063278585.1 cyclic lactone autoinducer peptide AgrD -
  IPU21_RS04275 (IPU21_04290) - 948082..948648 (-) 567 WP_212575292.1 accessory gene regulator AgrB -
  IPU21_RS13115 (IPU21_04295) - 949040..949120 (+) 81 WP_110161296.1 delta-lysin family phenol-soluble modulin -
  IPU21_RS04285 (IPU21_04300) - 949401..950204 (-) 804 WP_096606359.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28072.20 Da        Isoelectric Point: 5.2431

>NTDB_id=494795 IPU21_RS04260 WP_019166403.1 945897..946613(-) (agrA) [Staphylococcus delphini strain 245-1]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITRVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=494795 IPU21_RS04260 WP_019166403.1 945897..946613(-) (agrA) [Staphylococcus delphini strain 245-1]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGCATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGGAAATTGAGCTTGCTACCAATGACCCTTACGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGAAGCGAAATTCGTAAACACGATCCT
GTCGGGAATATTATTTTTGTGACGAGTCATAGTGAACTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTCAAAGATGATCCTGAAGAATTAAGAACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGGACGAGCTCGGTTTACGTGAACTATGATGATGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGACCGGTTCTTCAGATGTCACAACAGTTATGTGCTGAATAGAAGGAATATAACGCGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTCTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832