Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IPU22_RS09995 Genome accession   NZ_CP063367
Coordinates   2126227..2127195 (-) Length   322 a.a.
NCBI ID   WP_096604811.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 2794-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2121227..2132195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU22_RS09975 (IPU22_09970) - 2121974..2122918 (+) 945 WP_096604805.1 glycerophosphodiester phosphodiesterase -
  IPU22_RS09980 (IPU22_09975) - 2123347..2124384 (-) 1038 WP_096664192.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  IPU22_RS09985 (IPU22_09980) - 2124484..2125272 (-) 789 WP_096664189.1 ABC transporter ATP-binding protein -
  IPU22_RS09990 (IPU22_09985) - 2125269..2126234 (-) 966 WP_096664186.1 iron chelate uptake ABC transporter family permease subunit -
  IPU22_RS09995 (IPU22_09990) ceuB 2126227..2127195 (-) 969 WP_096604811.1 ABC transporter permease Machinery gene
  IPU22_RS10000 (IPU22_09995) - 2127742..2128986 (-) 1245 WP_096542152.1 Glu/Leu/Phe/Val family dehydrogenase -
  IPU22_RS10005 (IPU22_10000) - 2129094..2130293 (-) 1200 WP_096542154.1 ornithine--oxo-acid transaminase -
  IPU22_RS10010 (IPU22_10005) pruA 2130469..2132013 (-) 1545 WP_096542156.1 L-glutamate gamma-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35297.60 Da        Isoelectric Point: 10.4474

>NTDB_id=494781 IPU22_RS09995 WP_096604811.1 2126227..2127195(-) (ceuB) [Staphylococcus delphini strain 2794-1]
MRSFLMRLDVLIILLVIATCFSVFIGVSEVSPIHIHHLTDEQQNILLSSRIPRTVSIIISGSSLAVCGLIMQQLTRNKFV
SPTTAGTMDWARLGVLIALIAFPEAHILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYETLYISVPLLILAFVFANQFTIAGMGKSFSVNLGLHYEKVVNIGLVIASIITALVV
VTVGMMPFLGLIVPNLVSLFRGDHLKNALPHTAVFGALFVMICDVIGRLVIFPYEMTIGLTIGVIGSFIFIVMLMKGRSR
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=494781 IPU22_RS09995 WP_096604811.1 2126227..2127195(-) (ceuB) [Staphylococcus delphini strain 2794-1]
ATGAGAAGTTTTTTGATGCGTTTAGATGTTTTAATCATATTGTTAGTCATTGCAACGTGCTTCTCTGTGTTTATAGGTGT
ATCAGAAGTAAGTCCCATACATATACATCATTTAACTGATGAGCAACAAAATATCTTATTGTCCAGTAGAATTCCGAGAA
CGGTCAGCATTATTATTTCAGGGAGTTCGTTAGCTGTTTGTGGATTGATAATGCAACAATTAACAAGAAATAAATTTGTT
TCTCCAACAACTGCGGGAACGATGGATTGGGCGAGACTAGGGGTGTTGATTGCGCTTATCGCTTTTCCGGAAGCCCACAT
ACTCCTAAAGCTATTGTTTGCTACGTTATTAAGTTTGTTTGGAACGATGCTGTTCATGCAAATACTGCGAAGAATTCAGT
TCAAAGATGTGATCTTTATACCGTTAGTGGGGATTATGCTCGGAAATATTGTGTCGAGCTTCTCTTCTTTTGTCGCCTTA
CGCACGAATGCGGTACAAAGTATTGGTAATTTTATGCAAGGCAATTTTTCAATTATCACAAGTGGTAGGTATGAAACGTT
GTACATAAGTGTCCCTTTACTGATTTTAGCATTTGTATTTGCAAATCAATTTACAATTGCGGGTATGGGGAAATCCTTCA
GCGTCAATTTAGGGCTTCACTACGAAAAAGTGGTCAATATCGGTCTGGTGATTGCCTCTATCATCACAGCACTTGTTGTT
GTGACAGTGGGCATGATGCCGTTCTTAGGTTTGATTGTTCCTAATTTAGTTTCGCTTTTTAGAGGGGATCACCTCAAAAA
TGCATTGCCCCACACCGCAGTATTCGGCGCATTATTTGTCATGATTTGTGATGTCATAGGACGGTTAGTGATTTTCCCTT
ATGAAATGACAATTGGTTTAACCATTGGTGTCATCGGAAGTTTTATTTTTATAGTAATGCTGATGAAAGGACGTTCAAGA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.524

97.826

0.484