Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INH39_RS23290 Genome accession   NZ_CP063361
Coordinates   5052695..5054071 (+) Length   458 a.a.
NCBI ID   WP_243489509.1    Uniprot ID   -
Organism   Massilia violaceinigra strain sipir     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5047695..5059071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INH39_RS23265 (INH39_23175) rimI 5047872..5048342 (+) 471 WP_167074640.1 ribosomal protein S18-alanine N-acetyltransferase -
  INH39_RS23270 (INH39_23180) - 5048339..5049232 (+) 894 WP_243489505.1 uracil-DNA glycosylase -
  INH39_RS23275 (INH39_23185) - 5049216..5050184 (+) 969 WP_243489506.1 DUF1853 family protein -
  INH39_RS23280 (INH39_23190) lplT 5050206..5051468 (-) 1263 WP_243489507.1 lysophospholipid transporter LplT -
  INH39_RS23285 (INH39_23195) alr 5051596..5052702 (+) 1107 WP_243489508.1 alanine racemase -
  INH39_RS23290 (INH39_23200) radA 5052695..5054071 (+) 1377 WP_243489509.1 DNA repair protein RadA Machinery gene
  INH39_RS23295 (INH39_23205) - 5054165..5054452 (+) 288 WP_243489510.1 PilZ domain-containing protein -
  INH39_RS23300 (INH39_23210) fliD 5054617..5055984 (+) 1368 WP_243489511.1 flagellar filament capping protein FliD -
  INH39_RS23305 (INH39_23215) - 5055996..5057366 (+) 1371 WP_243489512.1 glutamine synthetase family protein -
  INH39_RS23310 (INH39_23220) - 5057494..5058516 (-) 1023 WP_243489513.1 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48719.27 Da        Isoelectric Point: 7.4345

>NTDB_id=494744 INH39_RS23290 WP_243489509.1 5052695..5054071(+) (radA) [Massilia violaceinigra strain sipir]
MAKAKTQYTCSECGGISNKWTGQCAACHAWNTMVETVVDTPGVNRLSQTQHKSLAQTAPVLSLADIEAVDVPRFGTGIEE
FDRVLGGGLVSGGVVLIGGDPGIGKSTLLLQALANISHIKSTLYVSGEESGAQIALRARRLGVDGKELKLQAEIQLEKIL
GTLADLKPEVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRVAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTQSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRSKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFSIAMIPKANVPKQKIEGMTIVAVERIDEAFNKLRELD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=494744 INH39_RS23290 WP_243489509.1 5052695..5054071(+) (radA) [Massilia violaceinigra strain sipir]
ATGGCTAAAGCTAAAACGCAATACACCTGCAGCGAGTGCGGTGGGATCAGCAATAAATGGACCGGGCAGTGCGCCGCCTG
CCATGCGTGGAACACCATGGTCGAGACGGTGGTCGACACGCCCGGCGTGAATCGCCTGTCGCAGACCCAGCACAAGAGCC
TGGCGCAGACTGCGCCGGTGCTGTCGCTGGCCGACATCGAGGCGGTCGACGTGCCGCGTTTCGGCACCGGCATCGAAGAA
TTCGACCGCGTGCTGGGCGGCGGGCTGGTTTCGGGCGGGGTGGTGCTGATCGGCGGCGACCCCGGGATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCCAATATATCGCATATCAAGAGTACTTTATATGTGAGCGGCGAGGAATCGGGCGCCCAGA
TCGCCCTGCGCGCGCGCCGCCTGGGCGTCGATGGCAAGGAACTTAAATTGCAGGCCGAGATCCAACTCGAGAAGATCCTC
GGCACCCTGGCCGACCTCAAGCCCGAAGTGGCGGTGATCGACTCGATCCAGACCGTGTATTCCGACGCGCTGACCTCGGC
GCCCGGTTCGGTGGCGCAGGTGCGCGAGTGCGCCGCGCAGCTCACGCGCGTGGCCAAGCAGACCGGCGTGACCATCATCC
TGGTCGGCCACGTGACCAAAGAAGGCGCGCTGGCCGGGCCGCGCGTACTCGAACACATCGTCGACACGGTACTGTATTTC
GAGGGCGACACCCAGTCGAGTTTCCGGCTGGTGCGGGCGATCAAGAACCGTTTCGGCGCGGTCAACGAACTGGGCGTGTT
CGCAATGACCGAAAAAGGGCTGAAAGGGGTCTCCAACCCGTCGGCGCTGTTTCTGTCGCAACACGACAACCAGGTGCCTG
GCTCGTGCGTGATGGTAACGCAGGAGGGCACGCGCCCTTTGCTGGTCGAAATCCAGGCGCTGGTCGATACCAGCCACCTG
CCCAACGCGCGCCGCCTGTCGGTGGGGCTGGAGCAAAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCCGG
CATCGCCGCCTTCGACCAGGATGTGTTCATCAATGCGGTTGGCGGGGTCAAGATCACCGAACCGGCGGCCGATCTGGCGG
TGCTGCTGGCGATTAACTCTTCGATGCGCAGCAAACCGCTGCCGCGCGGACTGGTGGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAAATCCGGCCGGCGCCGCGCGGACAGGAACGCCTGCGCGAAGCGGCCAAGCTGGGTTTCTCGATTGCGATGATTCC
CAAGGCCAACGTGCCGAAGCAGAAAATCGAGGGCATGACCATCGTGGCGGTCGAACGGATCGACGAAGCATTTAACAAAC
TGCGCGAACTCGATTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(66-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.352

99.345

0.48
  radA Streptococcus mitis SK321

47.072

100

0.474
  radA Streptococcus pneumoniae Rx1

47.072

100

0.474
  radA Streptococcus pneumoniae D39

47.072

100

0.474
  radA Streptococcus pneumoniae R6

47.072

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.072

100

0.474
  radA Streptococcus mitis NCTC 12261

47.072

100

0.474