Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   INH39_RS17350 Genome accession   NZ_CP063361
Coordinates   3762397..3763548 (-) Length   383 a.a.
NCBI ID   WP_243488560.1    Uniprot ID   -
Organism   Massilia violaceinigra strain sipir     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3757397..3768548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INH39_RS17340 (INH39_17260) ftsX 3760799..3761719 (-) 921 WP_243488559.1 permease-like cell division protein FtsX -
  INH39_RS17345 (INH39_17265) - 3761716..3762390 (-) 675 WP_167075639.1 cell division ATP-binding protein FtsE -
  INH39_RS17350 (INH39_17270) pilA 3762397..3763548 (-) 1152 WP_243488560.1 signal recognition particle-docking protein FtsY Machinery gene
  INH39_RS17355 (INH39_17275) - 3763671..3764612 (-) 942 WP_243488561.1 MerR family transcriptional regulator -
  INH39_RS17360 (INH39_17280) - 3764916..3766214 (+) 1299 WP_243488562.1 NAD(P)/FAD-dependent oxidoreductase -
  INH39_RS17365 (INH39_17285) - 3766201..3767019 (+) 819 WP_243488563.1 DUF1365 domain-containing protein -
  INH39_RS17370 (INH39_17290) - 3767016..3768257 (+) 1242 WP_243488564.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40746.34 Da        Isoelectric Point: 6.5191

>NTDB_id=494739 INH39_RS17350 WP_243488560.1 3762397..3763548(-) (pilA) [Massilia violaceinigra strain sipir]
MFSFFKKKPPAPDSPPPTPPAAPPPPVPVAPVAAVTPVAAAVTEPAPAPSRRYGSTSTFVAPTIPAFGSELIPETAERLG
NEADSKSSWMARLKAGLSKTSNNLSLLFVGARIDEDLYEELEAALLMSDAGMDATDFLLTELRRKVKEDKLLDAAAVKAA
LKVLMTDMLRPLVKPLELGRHEPLVMMIAGVNGAGKTTTIGKLAKHMQKYEQSVLLAAGDTFRAAAREQLMVWGQRNNVT
VIAQESGDPAAVAFDAVQSGKARKMDVVMVDTAGRLPTQLHLMEELKKIKRVIGKGMDGAPHEVLLVIDGNTGQNALAQV
KAFDDALQLTGLVITKLDGTAKGGVLAAIARTRPIPVYFIGVGEKIEDLQPFSADEFVEALLG

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=494739 INH39_RS17350 WP_243488560.1 3762397..3763548(-) (pilA) [Massilia violaceinigra strain sipir]
ATGTTTAGTTTTTTTAAGAAAAAACCGCCCGCCCCCGATTCTCCGCCGCCAACGCCGCCCGCAGCGCCCCCTCCGCCGGT
CCCCGTGGCCCCGGTGGCCGCTGTCACGCCCGTGGCCGCCGCCGTTACCGAGCCGGCGCCGGCGCCGTCGCGCCGCTACG
GCAGCACCTCGACCTTCGTCGCGCCAACCATCCCGGCCTTCGGCAGCGAACTGATTCCCGAAACCGCCGAACGCCTCGGC
AACGAGGCCGACAGCAAGAGTTCCTGGATGGCGCGCCTGAAAGCCGGCCTGTCGAAGACCTCGAACAACCTGAGCCTGCT
GTTCGTGGGCGCGCGCATCGACGAAGACCTGTACGAGGAACTCGAAGCGGCGCTGCTGATGTCCGACGCCGGCATGGACG
CCACCGATTTCCTGCTCACCGAGCTGCGCCGCAAGGTCAAGGAAGACAAGCTGCTCGATGCCGCCGCCGTCAAGGCCGCG
CTCAAGGTGCTCATGACCGACATGCTGCGCCCGCTGGTCAAGCCGCTCGAACTGGGCCGCCACGAACCGCTGGTGATGAT
GATCGCCGGCGTGAACGGCGCCGGCAAGACCACCACCATCGGCAAACTCGCCAAGCACATGCAGAAATACGAGCAATCGG
TGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGTTGATGGTGTGGGGCCAGCGCAACAACGTCACC
GTGATCGCCCAGGAGTCGGGCGACCCGGCCGCCGTGGCCTTCGACGCGGTGCAATCTGGCAAGGCGCGCAAGATGGACGT
GGTCATGGTCGACACGGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAACTGAAAAAAATCAAGCGCGTGATCG
GCAAGGGCATGGACGGCGCCCCGCACGAAGTACTGCTGGTCATCGACGGCAACACCGGCCAGAACGCCTTGGCCCAGGTC
AAGGCGTTTGATGACGCTCTGCAACTGACGGGCCTGGTCATCACCAAGCTCGACGGCACCGCCAAGGGCGGCGTGCTGGC
CGCGATCGCCCGCACCCGCCCGATTCCGGTCTACTTCATCGGGGTCGGCGAGAAAATCGAAGACCTGCAACCATTCAGCG
CCGACGAATTCGTCGAGGCGCTGCTGGGATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(184-383)

SRP54-type protein, helical bundle domain (SRP54_N)

(109-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.881

100

0.548