Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   INH39_RS06380 Genome accession   NZ_CP063361
Coordinates   1426892..1427293 (-) Length   133 a.a.
NCBI ID   WP_126076625.1    Uniprot ID   -
Organism   Massilia violaceinigra strain sipir     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1421892..1432293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INH39_RS06365 (INH39_06335) - 1423599..1425914 (-) 2316 WP_229421542.1 methyl-accepting chemotaxis protein -
  INH39_RS06370 (INH39_06340) - 1425959..1426501 (-) 543 WP_243492478.1 chemotaxis protein CheW -
  INH39_RS06375 (INH39_06345) - 1426505..1426876 (-) 372 WP_167073913.1 PleD family two-component system response regulator -
  INH39_RS06380 (INH39_06350) pilG 1426892..1427293 (-) 402 WP_126076625.1 PleD family two-component system response regulator Regulator
  INH39_RS06385 (INH39_06355) - 1427399..1427551 (-) 153 WP_167074514.1 rubredoxin -
  INH39_RS06390 (INH39_06360) - 1427660..1428496 (+) 837 WP_243492479.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  INH39_RS06395 (INH39_06365) hemL 1428493..1429782 (+) 1290 WP_243492480.1 glutamate-1-semialdehyde 2,1-aminomutase -
  INH39_RS06400 (INH39_06370) - 1429783..1430145 (-) 363 WP_243492481.1 colicin immunity protein -
  INH39_RS06405 (INH39_06375) - 1430178..1430651 (-) 474 WP_243492482.1 hypothetical protein -
  INH39_RS06410 (INH39_06380) corA 1430834..1431799 (-) 966 WP_167073903.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14670.98 Da        Isoelectric Point: 7.9062

>NTDB_id=494726 INH39_RS06380 WP_126076625.1 1426892..1427293(-) (pilG) [Massilia violaceinigra strain sipir]
MTTLPQPNVLKIMVIDDSSTIRRSAEIFLTQAGYQVVLAEDGFDALAKINDHHPSLIFCDILMPRLDGYQTCALIKRSAR
FHATPVLMLSSKDGLFDRARGLMVGSSAYLTKPFSKDSLLSAVREHTADTVSK

Nucleotide


Download         Length: 402 bp        

>NTDB_id=494726 INH39_RS06380 WP_126076625.1 1426892..1427293(-) (pilG) [Massilia violaceinigra strain sipir]
ATGACGACATTGCCGCAACCGAACGTACTGAAAATCATGGTGATCGACGACAGCAGCACGATTCGTCGATCGGCCGAGAT
TTTCCTCACCCAGGCAGGATATCAGGTGGTGCTGGCCGAAGATGGCTTCGATGCCCTGGCCAAGATTAACGACCATCATC
CGTCGCTGATTTTCTGCGACATCCTGATGCCGCGCCTGGACGGCTACCAGACCTGTGCGCTGATCAAGCGCAGTGCGCGT
TTTCATGCCACCCCGGTGCTGATGCTGTCGTCGAAAGACGGCCTGTTCGACCGGGCGCGCGGCCTGATGGTCGGCTCCTC
CGCCTATCTGACCAAACCCTTTAGCAAAGACAGTCTGCTTAGCGCCGTGCGCGAGCACACTGCCGATACCGTTTCAAAAT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.025

89.474

0.564