Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   INQ56_RS08975 Genome accession   NZ_CP063360
Coordinates   1775439..1775819 (+) Length   126 a.a.
NCBI ID   WP_228003937.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BIM B-263     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1770439..1780819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS08965 (INQ56_08965) - 1772163..1773071 (+) 909 WP_061419183.1 trypsin-like serine peptidase -
  INQ56_RS08970 (INQ56_08970) - 1773218..1775212 (+) 1995 WP_193804297.1 glycosyltransferase family 39 protein -
  INQ56_RS08975 (INQ56_08975) nucA/comI 1775439..1775819 (+) 381 WP_228003937.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  INQ56_RS08980 (INQ56_08980) - 1775963..1776811 (+) 849 WP_017359585.1 STAS domain-containing protein -
  INQ56_RS08985 (INQ56_08985) - 1776845..1777387 (-) 543 WP_193804299.1 IseA DL-endopeptidase inhibitor family protein -
  INQ56_RS08990 (INQ56_08990) - 1777684..1778127 (+) 444 WP_193804300.1 hypothetical protein -
  INQ56_RS08995 (INQ56_08995) lexA 1778175..1778795 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  INQ56_RS09000 (INQ56_09000) yneA 1778954..1779265 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  INQ56_RS09005 (INQ56_09005) - 1779283..1779930 (+) 648 WP_193804301.1 recombinase family protein -
  INQ56_RS09010 (INQ56_09010) - 1780000..1780230 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13762.37 Da        Isoelectric Point: 7.9019

>NTDB_id=494694 INQ56_RS08975 WP_228003937.1 1775439..1775819(+) (nucA/comI) [Bacillus altitudinis strain BIM B-263]
MGALLGGFGEDRSAKGAERYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYSDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=494694 INQ56_RS08975 WP_228003937.1 1775439..1775819(+) (nucA/comI) [Bacillus altitudinis strain BIM B-263]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGAGCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCCGGTTTTGATCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGAGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATTCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548