Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   INQ56_RS05220 Genome accession   NZ_CP063360
Coordinates   1039292..1039870 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain BIM B-263     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034292..1044870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS05200 (INQ56_05200) - 1034785..1036092 (-) 1308 Protein_967 globin-coupled sensor protein -
  INQ56_RS05205 (INQ56_05205) - 1036172..1037704 (-) 1533 WP_163116413.1 FAD-dependent oxidoreductase -
  INQ56_RS05210 (INQ56_05210) - 1037847..1038707 (+) 861 WP_046343106.1 SDR family oxidoreductase -
  INQ56_RS05215 (INQ56_05215) - 1038766..1039002 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  INQ56_RS05220 (INQ56_05220) comK 1039292..1039870 (+) 579 WP_017366958.1 competence protein ComK Regulator
  INQ56_RS05225 (INQ56_05225) - 1040014..1041120 (+) 1107 WP_193804204.1 alanine racemase -
  INQ56_RS05230 (INQ56_05230) - 1041506..1041988 (+) 483 WP_008348662.1 hypothetical protein -
  INQ56_RS05235 (INQ56_05235) - 1042019..1043458 (-) 1440 WP_061418607.1 PLP-dependent aminotransferase family protein -
  INQ56_RS05240 (INQ56_05240) - 1043601..1044770 (+) 1170 WP_045034720.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=494674 INQ56_RS05220 WP_017366958.1 1039292..1039870(+) (comK) [Bacillus altitudinis strain BIM B-263]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=494674 INQ56_RS05220 WP_017366958.1 1039292..1039870(+) (comK) [Bacillus altitudinis strain BIM B-263]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGTA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATATCACACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615