Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   INQ56_RS01950 Genome accession   NZ_CP063360
Coordinates   368066..368494 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain BIM B-263     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363066..373494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS01920 (INQ56_01920) - 363210..363539 (+) 330 WP_017366586.1 YckD family protein -
  INQ56_RS01925 (INQ56_01925) - 363586..364350 (-) 765 WP_163116277.1 MBL fold metallo-hydrolase -
  INQ56_RS01930 (INQ56_01930) - 364466..364885 (+) 420 WP_026050043.1 Lrp/AsnC family transcriptional regulator -
  INQ56_RS01935 (INQ56_01935) - 364910..365716 (+) 807 WP_045034600.1 aminoglycoside N(3)-acetyltransferase -
  INQ56_RS01940 (INQ56_01940) comJ 365718..366104 (-) 387 WP_039166300.1 competence protein ComJ -
  INQ56_RS01945 (INQ56_01945) - 366242..367939 (-) 1698 WP_045034599.1 methyl-accepting chemotaxis protein -
  INQ56_RS01950 (INQ56_01950) nucA/comI 368066..368494 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  INQ56_RS01955 (INQ56_01955) - 368862..370931 (+) 2070 WP_193804047.1 hydantoinase/oxoprolinase family protein -
  INQ56_RS01960 (INQ56_01960) - 370921..372906 (+) 1986 WP_193804049.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=494668 INQ56_RS01950 WP_007498233.1 368066..368494(-) (nucA/comI) [Bacillus altitudinis strain BIM B-263]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=494668 INQ56_RS01950 WP_007498233.1 368066..368494(-) (nucA/comI) [Bacillus altitudinis strain BIM B-263]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514