Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   INQ56_RS00255 Genome accession   NZ_CP063360
Coordinates   47057..47347 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BIM B-263     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42057..52347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS00215 (INQ56_00215) - 42090..42419 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  INQ56_RS00220 (INQ56_00220) - 42432..42872 (+) 441 WP_008341898.1 YaaR family protein -
  INQ56_RS00225 (INQ56_00225) holB 42884..43873 (+) 990 WP_045035083.1 DNA polymerase III subunit delta' -
  INQ56_RS00230 (INQ56_00230) - 43876..44703 (+) 828 WP_024719352.1 stage 0 sporulation family protein -
  INQ56_RS00235 (INQ56_00235) yabA 44718..45071 (+) 354 WP_045035084.1 DNA replication initiation control protein YabA -
  INQ56_RS00240 (INQ56_00240) - 45127..45870 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  INQ56_RS00245 (INQ56_00245) - 45857..46156 (+) 300 WP_024719353.1 GIY-YIG nuclease family protein -
  INQ56_RS00250 (INQ56_00250) rsmI 46131..47012 (+) 882 WP_045035085.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  INQ56_RS00255 (INQ56_00255) abrB 47057..47347 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  INQ56_RS00260 (INQ56_00260) metG 47867..49867 (+) 2001 WP_041506541.1 methionine--tRNA ligase -
  INQ56_RS00265 (INQ56_00265) - 49949..50716 (+) 768 WP_017359325.1 TatD family hydrolase -
  INQ56_RS00270 (INQ56_00270) - 50961..52163 (+) 1203 WP_045035087.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=494665 INQ56_RS00255 WP_087975202.1 47057..47347(-) (abrB) [Bacillus altitudinis strain BIM B-263]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=494665 INQ56_RS00255 WP_087975202.1 47057..47347(-) (abrB) [Bacillus altitudinis strain BIM B-263]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938