Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IOO21_RS06440 Genome accession   NZ_CP063357
Coordinates   1254805..1255773 (+) Length   322 a.a.
NCBI ID   WP_002869322.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R4B202     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249805..1260773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS06415 cdsA 1250712..1251437 (-) 726 WP_002869324.1 phosphatidate cytidylyltransferase -
  IOO21_RS06420 - 1251446..1251784 (-) 339 WP_002855905.1 hypothetical protein -
  IOO21_RS06425 - 1251786..1253093 (-) 1308 WP_002856257.1 NFACT family protein -
  IOO21_RS06430 mobA 1253155..1253730 (+) 576 WP_002855734.1 molybdenum cofactor guanylyltransferase -
  IOO21_RS06435 pldA 1253727..1254716 (+) 990 WP_002855844.1 phospholipase A -
  IOO21_RS06440 ceuB 1254805..1255773 (+) 969 WP_002869322.1 ABC transporter permease Machinery gene
  IOO21_RS06445 ceuC 1255766..1256704 (+) 939 WP_002869321.1 iron chelate uptake ABC transporter family permease subunit -
  IOO21_RS06450 ceuD 1256701..1257456 (+) 756 WP_002856278.1 ABC transporter ATP-binding protein -
  IOO21_RS06455 ceuB 1257469..1258461 (+) 993 WP_002856494.1 enterochelin ABC transporter substrate-binding protein CeuB -
  IOO21_RS06460 - 1258615..1258836 (+) 222 WP_002856036.1 hypothetical protein -
  IOO21_RS06465 - 1258837..1259118 (+) 282 WP_009882907.1 type II toxin-antitoxin system RelE/ParE family toxin -
  IOO21_RS06475 - 1259478..1260032 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35397.29 Da        Isoelectric Point: 9.6678

>NTDB_id=494622 IOO21_RS06440 WP_002869322.1 1254805..1255773(+) (ceuB) [Campylobacter jejuni strain R4B202]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=494622 IOO21_RS06440 WP_002869322.1 1254805..1255773(+) (ceuB) [Campylobacter jejuni strain R4B202]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACGGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACCCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

100

100

1