Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   IOO21_RS05510 Genome accession   NZ_CP063357
Coordinates   1068436..1069389 (+) Length   317 a.a.
NCBI ID   WP_002869014.1    Uniprot ID   A0A5Y9JB79
Organism   Campylobacter jejuni strain R4B202     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063436..1074389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS05485 neuC 1064012..1065136 (+) 1125 WP_002869019.1 UDP-N-acetylglucosamine 2-epimerase -
  IOO21_RS05490 - 1065129..1066076 (+) 948 WP_002869018.1 glycosyltransferase -
  IOO21_RS05495 - 1066073..1066738 (+) 666 WP_002869017.1 acylneuraminate cytidylyltransferase family protein -
  IOO21_RS08460 - 1066726..1067469 (+) 744 WP_002869016.1 CatB-related O-acetyltransferase -
  IOO21_RS05505 - 1067550..1068377 (-) 828 WP_002869015.1 glycosyltransferase family 2 protein -
  IOO21_RS05510 waaF 1068436..1069389 (+) 954 WP_002869014.1 lipopolysaccharide heptosyltransferase II Regulator
  IOO21_RS05515 - 1069396..1070151 (-) 756 WP_002869013.1 glycosyltransferase family 25 protein -
  IOO21_RS05520 gmhA 1070151..1070711 (-) 561 WP_002869012.1 D-sedoheptulose 7-phosphate isomerase -
  IOO21_RS05525 rfaE1 1070708..1072093 (-) 1386 WP_002869011.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  IOO21_RS05530 rfaD 1072086..1073039 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  IOO21_RS05535 gmhB 1073040..1073600 (-) 561 WP_002869010.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  IOO21_RS05540 - 1073682..1073984 (+) 303 WP_002852762.1 cytochrome c -
  IOO21_RS05545 ccoS 1074007..1074213 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36457.07 Da        Isoelectric Point: 10.2322

>NTDB_id=494617 IOO21_RS05510 WP_002869014.1 1068436..1069389(+) (waaF) [Campylobacter jejuni strain R4B202]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=494617 IOO21_RS05510 WP_002869014.1 1068436..1069389(+) (waaF) [Campylobacter jejuni strain R4B202]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9JB79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.586

99.054

0.937