Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   IOO21_RS05165 Genome accession   NZ_CP063357
Coordinates   999954..1000256 (+) Length   100 a.a.
NCBI ID   WP_002855822.1    Uniprot ID   A0A1E7NY14
Organism   Campylobacter jejuni strain R4B202     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 994954..1005256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS05140 rpsR 995317..995577 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  IOO21_RS05145 lon 995637..998012 (-) 2376 WP_002853487.1 endopeptidase La -
  IOO21_RS05150 - 998029..998676 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  IOO21_RS05155 fliW 998837..999226 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  IOO21_RS05160 proC 999226..999957 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  IOO21_RS05165 ctsT 999954..1000256 (+) 303 WP_002855822.1 transformation system protein Machinery gene
  IOO21_RS05170 - 1000253..1000915 (+) 663 WP_002866103.1 hypothetical protein -
  IOO21_RS05175 - 1000912..1001364 (+) 453 WP_002869049.1 hypothetical protein -
  IOO21_RS05180 hemD 1001361..1001990 (-) 630 WP_002856298.1 uroporphyrinogen-III synthase -
  IOO21_RS05185 thiE 1001968..1002600 (-) 633 WP_002856400.1 thiamine phosphate synthase -
  IOO21_RS05190 thiD 1002590..1003402 (-) 813 WP_002869047.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IOO21_RS05195 - 1003399..1004085 (-) 687 WP_002869046.1 3-methyladenine DNA glycosylase -
  IOO21_RS05200 - 1004082..1004843 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12150.21 Da        Isoelectric Point: 6.2957

>NTDB_id=494615 IOO21_RS05165 WP_002855822.1 999954..1000256(+) (ctsT) [Campylobacter jejuni strain R4B202]
MKKAFILIESISAITIISLIFIGIFYYYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=494615 IOO21_RS05165 WP_002855822.1 999954..1000256(+) (ctsT) [Campylobacter jejuni strain R4B202]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7NY14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

100

100

1