Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   IOO21_RS03255 Genome accession   NZ_CP063357
Coordinates   622412..622849 (+) Length   145 a.a.
NCBI ID   WP_002868845.1    Uniprot ID   A0A5T0SJ37
Organism   Campylobacter jejuni strain R4B202     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617412..627849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS03235 kdpD 617903..619831 (+) 1929 WP_002868847.1 sensor histidine kinase KdpD -
  IOO21_RS03240 uvrB 619826..621799 (-) 1974 WP_002868846.1 excinuclease ABC subunit UvrB -
  IOO21_RS03245 - 621953..622183 (+) 231 WP_002852327.1 hypothetical protein -
  IOO21_RS03250 - 622173..622415 (+) 243 WP_002854947.1 hypothetical protein -
  IOO21_RS03255 Cj0683 622412..622849 (+) 438 WP_002868845.1 type II secretion system protein Machinery gene
  IOO21_RS03260 priA 622831..624684 (+) 1854 WP_002868844.1 primosomal protein N' -
  IOO21_RS03265 cipA 624694..626087 (-) 1394 Protein_628 DUF2972 domain-containing protein -
  IOO21_RS03270 ispG 626233..627306 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16799.78 Da        Isoelectric Point: 8.0993

>NTDB_id=494612 IOO21_RS03255 WP_002868845.1 622412..622849(+) (Cj0683) [Campylobacter jejuni strain R4B202]
MNKAFTLLELVFVILILGIFSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=494612 IOO21_RS03255 WP_002868845.1 622412..622849(+) (Cj0683) [Campylobacter jejuni strain R4B202]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTTTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0SJ37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993