Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AWH56_RS26045 Genome accession   NZ_CP063356
Coordinates   5167294..5169039 (-) Length   581 a.a.
NCBI ID   WP_071315499.1    Uniprot ID   A0A1S2MFC8
Organism   Anaerobacillus isosaccharinicus strain NB2006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5162294..5174039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWH56_RS26035 (AWH56_026035) spo0A 5164815..5165612 (-) 798 WP_071315501.1 sporulation transcription factor Spo0A -
  AWH56_RS26040 (AWH56_026040) spoIVB 5165908..5167182 (-) 1275 WP_071315500.1 SpoIVB peptidase -
  AWH56_RS26045 (AWH56_026045) recN 5167294..5169039 (-) 1746 WP_071315499.1 DNA repair protein RecN Machinery gene
  AWH56_RS26050 (AWH56_026050) ahrC 5169073..5169522 (-) 450 WP_071315498.1 transcriptional regulator AhrC/ArgR -
  AWH56_RS26055 (AWH56_026055) - 5169736..5170554 (-) 819 WP_071315497.1 TlyA family RNA methyltransferase -
  AWH56_RS26060 (AWH56_026060) dxs 5170558..5172447 (-) 1890 WP_071315496.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AWH56_RS26065 (AWH56_026065) - 5172457..5173068 (-) 612 WP_071315495.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65839.06 Da        Isoelectric Point: 5.2646

>NTDB_id=494603 AWH56_RS26045 WP_071315499.1 5167294..5169039(-) (recN) [Anaerobacillus isosaccharinicus strain NB2006]
MLIELSIKNFAIIENLTVPFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSVEFVRHGANRAEIQGLFFIDNLSHDIYDK
ALQLGIEINDDQMVVLQRDITSQGKSICRVNGKLVTLGILRELGESLVDIHGQHEHQHLMQVERHLSLLDQFIVDKISDA
LNEYKNIYKTFTELKGRVKQFSENEQKIAHRLDLLQYQLKEIEKSNLTPDEDVHLTEERFKLSNGEKLYKTIHDSYHALY
GDGKGLDWLMDAMNHVVEAATIDKQLIPLKETISNCYYLLEEATFSLRDYYEGIEFDPDRLNLIEGRLNEISQLKRKYGH
DVTHILEYSSKIEEEIDNLLNREAKIEEIQNQLEHVSYDLYLEAKNLTQIRTTAAKDLGDKIQQHLKDLYMEKTKFYIEV
SERAASEKDPAIDGKYVHFQEDGIDKVEFLLSTNPGEPLKPLAKIASGGEISRIMLALKSIFSSHHGVTSLIFDEVDTGV
SGRVAQAIAEKIYKISTDSQVLCITHLPQVAAMATTHLYISKEQLENKTVTKVATLTKLEQVEEVARMLSGAETTKLTRE
NAKELLDQAEKIKGVYVKLTN

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=494603 AWH56_RS26045 WP_071315499.1 5167294..5169039(-) (recN) [Anaerobacillus isosaccharinicus strain NB2006]
GTGTTAATTGAGCTATCAATTAAGAATTTTGCAATCATTGAAAATCTAACGGTTCCCTTTGAAAAAGGATTAACGGTTTT
GACTGGAGAAACAGGTGCTGGTAAATCAATTATTATTGATGCCATCAGTTTACTTGTTGGTGGGAGAGGTTCTGTAGAAT
TTGTTCGCCATGGGGCAAATCGTGCTGAAATTCAAGGATTATTTTTTATTGATAATCTTTCCCATGATATTTATGATAAA
GCTCTTCAATTAGGAATTGAAATTAACGATGATCAAATGGTTGTTTTACAGAGAGATATCACGTCACAAGGAAAAAGTAT
TTGTAGAGTTAACGGAAAGCTTGTTACTTTGGGAATTTTGCGTGAATTAGGTGAATCGTTAGTTGATATCCATGGCCAGC
ATGAGCATCAACATTTAATGCAAGTTGAACGGCATTTGTCTTTACTTGACCAATTTATAGTGGACAAGATTAGTGATGCG
TTAAATGAATATAAAAATATTTATAAGACATTTACGGAATTAAAAGGAAGAGTCAAACAATTTTCCGAAAATGAACAAAA
AATTGCTCACCGTTTAGACTTGCTTCAATATCAGTTAAAGGAAATTGAAAAGTCTAATCTTACACCAGATGAAGATGTAC
ACTTAACTGAAGAAAGATTTAAGCTCTCAAATGGTGAAAAGCTTTACAAAACCATTCATGATTCCTATCATGCCCTTTAT
GGTGATGGTAAAGGATTGGATTGGTTAATGGATGCAATGAACCATGTAGTAGAAGCTGCGACGATTGATAAGCAGTTAAT
ACCTTTAAAAGAAACGATTAGTAACTGTTATTATTTATTAGAGGAAGCAACCTTTTCATTAAGAGATTATTATGAGGGGA
TTGAATTTGATCCTGACCGCTTAAACCTAATAGAAGGGCGCTTAAATGAAATTTCCCAATTGAAACGAAAATATGGGCAT
GATGTTACACACATTTTGGAATATTCTTCTAAAATTGAAGAGGAAATTGACAATTTACTAAATAGAGAAGCAAAAATTGA
AGAAATTCAAAACCAATTAGAACATGTAAGTTATGATTTATATCTCGAAGCAAAAAATTTAACACAAATAAGAACTACAG
CAGCAAAGGATTTGGGAGACAAAATCCAACAACATTTAAAAGATCTTTATATGGAAAAAACAAAGTTTTATATCGAAGTT
TCAGAAAGAGCTGCGTCAGAAAAGGATCCAGCAATAGATGGGAAGTATGTCCATTTTCAAGAGGATGGTATTGATAAGGT
TGAATTTTTACTTTCGACTAATCCTGGTGAGCCACTTAAACCGTTAGCTAAAATAGCTTCTGGTGGAGAAATATCCAGGA
TTATGCTCGCGTTAAAATCGATATTCTCTTCACATCACGGTGTAACATCCCTAATTTTTGATGAGGTTGACACAGGGGTG
AGTGGACGTGTTGCACAAGCTATTGCTGAAAAAATATATAAAATCTCAACTGACTCCCAAGTCTTATGTATCACTCATTT
ACCGCAAGTCGCAGCAATGGCTACTACACACCTTTATATATCAAAAGAACAATTAGAAAATAAAACAGTAACAAAAGTAG
CTACATTAACTAAATTGGAACAAGTGGAAGAGGTTGCCAGAATGCTTTCTGGAGCCGAGACAACGAAGCTAACCAGAGAA
AATGCAAAGGAATTATTGGATCAAGCAGAAAAAATTAAAGGTGTATATGTAAAGCTAACCAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MFC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

57.043

98.967

0.565