Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AWH56_RS08790 Genome accession   NZ_CP063356
Coordinates   1761663..1762109 (+) Length   148 a.a.
NCBI ID   WP_071318979.1    Uniprot ID   A0A1S2L3H3
Organism   Anaerobacillus isosaccharinicus strain NB2006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1756663..1767109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWH56_RS08760 (AWH56_008760) - 1756929..1757789 (+) 861 WP_083388797.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  AWH56_RS08765 (AWH56_008765) - 1758283..1758495 (+) 213 WP_071318974.1 hypothetical protein -
  AWH56_RS26425 - 1758557..1759741 (+) 1185 WP_071318975.1 ERF family protein -
  AWH56_RS08775 (AWH56_008775) - 1759741..1760031 (+) 291 WP_071318976.1 hypothetical protein -
  AWH56_RS08780 (AWH56_008780) - 1760047..1760913 (+) 867 WP_071318977.1 ORF6N domain-containing protein -
  AWH56_RS08785 (AWH56_008785) - 1760919..1761626 (+) 708 WP_071318978.1 CHC2 zinc finger domain-containing protein -
  AWH56_RS08790 (AWH56_008790) ssbA 1761663..1762109 (+) 447 WP_071318979.1 single-stranded DNA-binding protein Machinery gene
  AWH56_RS08795 (AWH56_008795) - 1762122..1762328 (+) 207 WP_071318980.1 hypothetical protein -
  AWH56_RS08800 (AWH56_008800) - 1762402..1762662 (+) 261 WP_071318981.1 hypothetical protein -
  AWH56_RS26980 - 1762665..1762799 (+) 135 WP_274598816.1 hypothetical protein -
  AWH56_RS08805 (AWH56_008805) - 1762913..1763590 (+) 678 WP_071318982.1 hypothetical protein -
  AWH56_RS08810 (AWH56_008810) radC 1763683..1764354 (+) 672 WP_071318983.1 RadC family protein -
  AWH56_RS08815 (AWH56_008815) - 1764354..1764569 (+) 216 WP_071318984.1 hypothetical protein -
  AWH56_RS08820 (AWH56_008820) - 1764653..1764952 (+) 300 WP_071318985.1 hypothetical protein -
  AWH56_RS08825 (AWH56_008825) - 1764967..1765179 (+) 213 WP_071318986.1 hypothetical protein -
  AWH56_RS08830 (AWH56_008830) - 1765193..1765999 (+) 807 WP_071318987.1 hypothetical protein -
  AWH56_RS26985 - 1766546..1766851 (+) 306 WP_274598843.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16415.18 Da        Isoelectric Point: 5.7612

>NTDB_id=494587 AWH56_RS08790 WP_071318979.1 1761663..1762109(+) (ssbA) [Anaerobacillus isosaccharinicus strain NB2006]
MLNSVNLIGRLTRKPEMKYTPNGIAVGNVNLAVNRAYLNQEGKREADFIQVIAWKKLIENAATHLDKGSLISVEARIQTR
SYENNEGKKVFVTEIVADKIHYLDTKGKGNNSSNNNNSNNNTSYDNNDPFAGSDPFADNLPDDDGLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=494587 AWH56_RS08790 WP_071318979.1 1761663..1762109(+) (ssbA) [Anaerobacillus isosaccharinicus strain NB2006]
ATGTTAAATTCAGTAAACTTAATTGGTCGCTTAACTCGTAAACCGGAGATGAAATACACACCTAACGGAATTGCTGTAGG
TAATGTCAATCTCGCGGTTAACAGAGCCTATTTAAATCAAGAAGGAAAAAGAGAAGCTGATTTCATTCAAGTTATTGCTT
GGAAAAAACTTATTGAGAATGCAGCAACTCACCTTGATAAAGGTAGTTTAATATCTGTCGAAGCTAGAATTCAGACTAGG
AGTTATGAAAATAACGAAGGGAAAAAAGTTTTTGTTACGGAGATTGTAGCCGATAAAATTCATTACCTAGATACAAAAGG
TAAGGGGAACAACTCAAGTAACAACAACAATTCAAATAACAACACTTCTTATGATAACAATGATCCGTTTGCTGGCAGTG
ATCCATTTGCTGATAACTTACCAGATGACGATGGATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2L3H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.186

100

0.514
  ssb Latilactobacillus sakei subsp. sakei 23K

42.105

100

0.486
  ssbB/cilA Streptococcus mitis NCTC 12261

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

37.162

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.162

100

0.372
  ssbB/cilA Streptococcus mitis SK321

37.162

100

0.372
  ssbA Streptococcus mutans UA159

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae D39

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae R6

37.162

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.943

71.622

0.365