NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	IMX26_RS13870	Genome accession	NZ_CP063353
Coordinates	3001366..3002727 (+)	Length	453 a.a.
NCBI ID	WP_195158970.1	Uniprot ID	-
Organism	Clostridium sp. 'deep sea'
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2996366..3007727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMX26_RS13855 (IMX26_13855)	-	2996988..2997941 (+)	954	WP_195158967.1	ABC transporter permease	-
IMX26_RS13860 (IMX26_13860)	-	2997934..2999061 (+)	1128	WP_195158968.1	ABC transporter permease	-
IMX26_RS18180 (IMX26_13865)	-	2999061..3001067 (+)	2007	WP_195158969.1	ABC transporter ATP-binding protein	-
IMX26_RS13870 (IMX26_13870)	radA	3001366..3002727 (+)	1362	WP_195158970.1	DNA repair protein RadA	Machinery gene
IMX26_RS13875 (IMX26_13875)	-	3002794..3003192 (-)	399	WP_195158971.1	DUF1573 domain-containing protein	-
IMX26_RS13880 (IMX26_13880)	-	3003537..3004601 (+)	1065	WP_195161413.1	PIN domain-containing protein	-
IMX26_RS13885 (IMX26_13885)	ispD	3004608..3005288 (+)	681	WP_279324863.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMX26_RS17970	ispF	3005282..3005752 (+)	471	Protein_2745	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMX26_RS17975	-	3005825..3006181 (+)	357	WP_243259364.1	ribonuclease III domain-containing protein	-
IMX26_RS13895 (IMX26_13895)	thyX	3006181..3006849 (+)	669	WP_195161414.1	FAD-dependent thymidylate synthase	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 49162.81 Da Isoelectric Point: 8.5503

                                >NTDB_id=494539 IMX26_RS13870 WP_195158970.1 3001366..3002727(+) (radA) [Clostridium sp. 'deep sea']

MSKNKTVFVCNECGSETPRWSGKCTSCGAWNTLVEVIVNKKSKASTNKHMAGQTSKPVLLNKIVSGNEIRFSSGIKELNR

VLGGGIVPGEMALIGGDPGIGKSTLLLQMAIKLTQNGIKVFYVTGEESVQQVKMRAERLAGENEDIYLMAETDVDLIIQN

IHQINPQIVIIDSIQTLVTSEIGSAPGSVSQVRECAGRLLKIAKAKEIAVFLVGHVTKEGSIAGPRVLEHMVDCVLYFEG

DNYNSFRILRAVKNRFGSTNEIGVFTMEGHGLEEVSNPSAHLLRERESSAIGSVVTATMEGTRPVLVEIQSLLTDTNYGT

PRRMTNGVDYNRTAMLMAVLQKRAGLYLSQQDAYVNAIGGIRVNEPAADLAICLSIYSSLNNNEVSPSLLAVGEVGLTGE

VRAISQLSLRVAEAEKMGFKSIIVPKQSLKNLKQKYVIEVIAVKNINEALRKI

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=494539 IMX26_RS13870 WP_195158970.1 3001366..3002727(+) (radA) [Clostridium sp. 'deep sea']

ATGTCTAAAAATAAAACAGTGTTTGTTTGTAATGAGTGTGGCTCCGAGACCCCGCGTTGGTCTGGTAAATGTACCTCATG

TGGAGCATGGAACACTTTAGTTGAAGTTATAGTCAATAAAAAAAGTAAGGCATCTACTAATAAGCATATGGCTGGTCAAA

CAAGTAAGCCAGTTTTATTAAATAAAATTGTTTCAGGAAATGAAATTAGATTTAGCAGTGGTATTAAGGAGCTTAATAGA

GTATTAGGTGGTGGTATAGTTCCTGGTGAAATGGCTCTTATAGGAGGAGATCCAGGCATAGGTAAATCTACCCTACTACT

ACAAATGGCCATTAAACTTACCCAAAATGGAATTAAGGTTTTTTATGTTACGGGTGAGGAATCTGTTCAGCAGGTTAAAA

TGAGAGCTGAACGATTAGCTGGAGAGAATGAAGATATTTATTTAATGGCTGAAACAGATGTGGATTTAATAATTCAAAAT

ATCCATCAAATTAATCCGCAAATAGTTATCATAGATTCTATCCAAACTTTAGTAACTAGTGAGATAGGGTCAGCTCCAGG

TAGTGTTAGTCAGGTTAGAGAGTGTGCTGGTAGATTACTAAAAATAGCTAAAGCCAAAGAAATAGCGGTATTTTTAGTTG

GTCATGTTACTAAAGAGGGTTCAATTGCTGGACCACGGGTACTAGAGCACATGGTAGATTGTGTATTATACTTTGAGGGA

GATAATTATAACTCTTTTAGAATATTAAGGGCAGTTAAAAATCGCTTTGGTTCCACTAATGAAATAGGAGTATTTACTAT

GGAAGGTCATGGTTTAGAAGAGGTTAGTAATCCCTCTGCTCATTTATTAAGAGAGCGAGAGTCTTCTGCCATAGGATCTG

TTGTAACTGCAACAATGGAGGGAACTCGACCTGTTTTGGTGGAGATTCAATCACTGCTAACAGACACTAATTATGGAACA

CCTCGTAGAATGACTAATGGCGTAGACTATAATAGAACAGCAATGTTGATGGCCGTTTTACAGAAAAGAGCAGGCCTCTA

TTTAAGTCAGCAAGATGCCTATGTAAACGCTATTGGAGGTATAAGAGTTAATGAGCCAGCAGCAGATTTAGCTATTTGTT

TATCAATCTACTCTAGCTTAAACAATAATGAAGTATCACCAAGCCTTTTGGCGGTTGGTGAGGTAGGTTTAACAGGAGAA

GTAAGGGCAATTTCTCAGTTATCTTTACGGGTTGCAGAGGCTGAAAAAATGGGTTTTAAATCAATAATAGTTCCTAAACA

AAGCCTAAAAAACCTTAAACAAAAATATGTAATAGAGGTTATTGCAGTTAAAAATATTAATGAGGCATTACGAAAAATAT

AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	54.084	100	0.541
radA	Streptococcus mitis SK321	50.993	100	0.51
radA	Streptococcus mitis NCTC 12261	50.993	100	0.51
radA	Streptococcus pneumoniae Rx1	50.993	100	0.51
radA	Streptococcus pneumoniae D39	50.993	100	0.51
radA	Streptococcus pneumoniae R6	50.993	100	0.51
radA	Streptococcus pneumoniae TIGR4	50.993	100	0.51

Detailed information NTG0494539