Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IN877_RS14075 Genome accession   NZ_CP063341
Coordinates   2912479..2913108 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BS90R-A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2907479..2918108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IN877_RS14060 (IN877_14060) helD 2907721..2909775 (-) 2055 WP_001315388.1 DNA helicase IV -
  IN877_RS14065 (IN877_14065) yccF 2909898..2910344 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IN877_RS14070 (IN877_14070) yccS 2910354..2912516 (+) 2163 WP_000875044.1 YccS family putative transporter -
  IN877_RS14075 (IN877_14075) sxy/tfoX 2912479..2913108 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IN877_RS14080 (IN877_14080) sulA 2913327..2913836 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IN877_RS14085 (IN877_14085) ompA 2914193..2915245 (+) 1053 WP_001361736.1 porin OmpA -
  IN877_RS14090 (IN877_14090) matP 2915321..2915773 (-) 453 WP_203115678.1 macrodomain Ter protein MatP -
  IN877_RS14095 (IN877_14095) ycbZ 2915959..2917719 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=494490 IN877_RS14075 WP_000839153.1 2912479..2913108(-) (sxy/tfoX) [Escherichia coli strain BS90R-A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=494490 IN877_RS14075 WP_000839153.1 2912479..2913108(-) (sxy/tfoX) [Escherichia coli strain BS90R-A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1