Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IN878_RS22915 Genome accession   NZ_CP063332
Coordinates   4719434..4720063 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BS74R-D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4714434..4725063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IN878_RS22895 (IN878_22910) ycbZ 4714835..4716595 (-) 1761 WP_000156518.1 Lon protease family protein -
  IN878_RS22900 (IN878_22915) matP 4716781..4717233 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IN878_RS22905 (IN878_22920) ompA 4717309..4718349 (-) 1041 WP_000750416.1 porin OmpA -
  IN878_RS22910 (IN878_22925) sulA 4718706..4719215 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IN878_RS22915 (IN878_22930) sxy/tfoX 4719434..4720063 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IN878_RS22920 (IN878_22935) yccS 4720026..4722188 (-) 2163 WP_000875061.1 YccS family putative transporter -
  IN878_RS22925 (IN878_22940) yccF 4722198..4722644 (-) 447 WP_001261235.1 YccF domain-containing protein -
  IN878_RS22930 (IN878_22945) helD 4722767..4724821 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=494476 IN878_RS22915 WP_000839153.1 4719434..4720063(+) (sxy/tfoX) [Escherichia coli strain BS74R-D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=494476 IN878_RS22915 WP_000839153.1 4719434..4720063(+) (sxy/tfoX) [Escherichia coli strain BS74R-D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1