Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ETD67_RS14300 Genome accession   NZ_CP063330
Coordinates   2917942..2918547 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Albany strain R17.2117     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912942..2923547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETD67_RS14285 (ETD67_14285) helD 2913159..2915213 (-) 2055 WP_023241546.1 DNA helicase IV -
  ETD67_RS14290 (ETD67_14290) - 2915337..2915783 (+) 447 WP_001261222.1 YccF domain-containing protein -
  ETD67_RS14295 (ETD67_14295) yccS 2915802..2917955 (+) 2154 WP_023241545.1 YccS family putative transporter -
  ETD67_RS14300 (ETD67_14300) sxy/tfoX 2917942..2918547 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ETD67_RS14305 (ETD67_14305) sulA 2918764..2919273 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  ETD67_RS14310 (ETD67_14310) ompA 2919630..2920682 (+) 1053 WP_001670727.1 porin OmpA -
  ETD67_RS14315 (ETD67_14315) matP 2920754..2921206 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ETD67_RS14320 (ETD67_14320) - 2921392..2923152 (+) 1761 WP_023241544.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=494446 ETD67_RS14300 WP_001202375.1 2917942..2918547(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Albany strain R17.2117]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=494446 ETD67_RS14300 WP_001202375.1 2917942..2918547(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Albany strain R17.2117]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751