Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNUCC6_RS15260 Genome accession   NZ_CP063302
Coordinates   3084413..3085789 (+) Length   458 a.a.
NCBI ID   WP_193737992.1    Uniprot ID   -
Organism   Viridibacillus sp. JNUCC-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3079413..3090789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC6_RS15240 (JNUCC6_15240) - 3079687..3080157 (+) 471 WP_193737990.1 CtsR family transcriptional regulator -
  JNUCC6_RS15245 (JNUCC6_15245) - 3080173..3080736 (+) 564 WP_193737991.1 nucleotide excision repair protein -
  JNUCC6_RS15250 (JNUCC6_15250) - 3080726..3081847 (+) 1122 WP_053418518.1 protein arginine kinase -
  JNUCC6_RS15255 (JNUCC6_15255) - 3081837..3084275 (+) 2439 WP_227751961.1 ATP-dependent Clp protease ATP-binding subunit -
  JNUCC6_RS15260 (JNUCC6_15260) radA 3084413..3085789 (+) 1377 WP_193737992.1 DNA repair protein RadA Machinery gene
  JNUCC6_RS15265 (JNUCC6_15265) - 3085831..3086493 (-) 663 WP_193737993.1 acetate uptake transporter -
  JNUCC6_RS15270 (JNUCC6_15270) - 3086804..3087901 (+) 1098 WP_193737994.1 PIN/TRAM domain-containing protein -
  JNUCC6_RS15275 (JNUCC6_15275) ispD 3088013..3088654 (+) 642 WP_193741116.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JNUCC6_RS15280 (JNUCC6_15280) ispF 3088657..3089133 (+) 477 WP_193737995.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JNUCC6_RS15285 (JNUCC6_15285) gltX 3089210..3090670 (+) 1461 WP_193737996.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50138.77 Da        Isoelectric Point: 6.8946

>NTDB_id=494310 JNUCC6_RS15260 WP_193737992.1 3084413..3085789(+) (radA) [Viridibacillus sp. JNUCC-6]
MVKKKTKFLCNSCGYESPKWMGRCPGCGEWNKMVEEVEVISKGPRGAFQHSSTTSQKAMPIISIETEDAPRVETELDELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVKSAELYIYSETNLEFLNQ
TIEEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSSVVASMEGTRPILVEIQALVTPSSFN
YPKRMATGIDQNRVSLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSYQDRAVSAGDCIIGEVGLTG
EVRRVSRVEQRVQEAAKLGFKRAIVPASNIGGWDYPAGIEIVGVETVNEALKLCFRDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=494310 JNUCC6_RS15260 WP_193737992.1 3084413..3085789(+) (radA) [Viridibacillus sp. JNUCC-6]
ATGGTTAAAAAGAAAACGAAATTTTTATGTAATTCTTGTGGTTATGAATCACCTAAATGGATGGGAAGATGTCCTGGGTG
CGGTGAATGGAATAAGATGGTGGAAGAAGTAGAAGTCATTTCTAAAGGACCTAGAGGAGCTTTTCAGCACTCATCAACTA
CTTCTCAAAAGGCTATGCCAATTATTTCGATTGAGACAGAAGATGCGCCTAGAGTTGAAACAGAACTAGATGAATTGAAT
CGTGTACTTGGTGGAGGCGTAGTGCCCGGTTCTTTAGTGTTAATTGGTGGCGATCCTGGGATCGGTAAATCTACACTACT
TTTACAAGTTTCAGCGTTGCTCTCTAATAAAGGTCATAGGGTACTCTATATTTCTGGTGAGGAATCCATCCGCCAAACAA
AGTTACGTGCTGAGCGACTAGGTGTGAAGTCAGCTGAGCTATATATTTACTCTGAAACGAACTTGGAGTTTTTAAATCAA
ACAATAGAAGAAGTTCAACCGAAGTTTGTCATTGTTGACTCCATTCAAACTGTGCATCATCCAGAAGTAACTTCTGCACC
AGGTAGTGTATCACAAGTGCGTGAATGTACTGCTGAATTAATGCGTATTGCTAAGACAAAAAATATTGCCATTTTCCTTG
TTGGGCATGTAACAAAAGAAGGGCAAATAGCAGGTCCACGTATTTTAGAACATATGGTAGATACGGTTCTTTATTTTGAA
GGAGAGCGTCATCATACGTATAGAATATTACGTAGTCAAAAAAACCGCTTTGGGTCAACGAATGAAATTGCCATCTTTGA
AATGTTACAGGGTGGTTTAAAAGAAGTATTGAATCCTTCTGAATTGTTCTTGCAAGAACGTTCGCAAGGGGCTGCGGGTT
CTAGCGTCGTTGCCTCAATGGAAGGGACACGCCCAATATTAGTTGAGATCCAAGCTTTAGTGACGCCTTCGAGCTTTAAC
TATCCGAAACGTATGGCTACAGGTATTGATCAGAATCGTGTGTCGTTGTTGATGGCAGTACTTGAAAAGCGTATGGGTAT
GCTGCTACAAGCTCAAGATGCATACATTAAAGTCGCAGGTGGCGTAAAACTAGATGAACCGGCAATCGATTTAGCAGTCT
TAACAAGTATTGTTTCAAGCTATCAGGACCGTGCTGTGAGTGCAGGAGACTGTATTATAGGTGAAGTAGGTTTAACAGGT
GAAGTGCGTCGTGTATCGCGTGTGGAGCAGCGTGTTCAAGAGGCTGCAAAGCTAGGCTTTAAACGTGCCATTGTTCCGGC
CTCTAACATAGGAGGTTGGGATTATCCAGCTGGTATTGAAATTGTTGGGGTAGAGACGGTAAACGAGGCGTTGAAACTTT
GCTTCCGTGATTTATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.088

99.345

0.716
  radA Streptococcus pneumoniae Rx1

63.158

99.563

0.629
  radA Streptococcus pneumoniae D39

63.158

99.563

0.629
  radA Streptococcus pneumoniae R6

63.158

99.563

0.629
  radA Streptococcus pneumoniae TIGR4

63.158

99.563

0.629
  radA Streptococcus mitis NCTC 12261

63.158

99.563

0.629
  radA Streptococcus mitis SK321

63.158

99.563

0.629