Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JNUCC6_RS13165 Genome accession   NZ_CP063302
Coordinates   2668423..2669373 (-) Length   316 a.a.
NCBI ID   WP_193737701.1    Uniprot ID   -
Organism   Viridibacillus sp. JNUCC-6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2663423..2674373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC6_RS13135 (JNUCC6_13135) - 2664017..2664496 (+) 480 WP_193737696.1 hypothetical protein -
  JNUCC6_RS13140 (JNUCC6_13140) - 2664636..2665262 (-) 627 WP_193737697.1 phosphatase PAP2 family protein -
  JNUCC6_RS13145 (JNUCC6_13145) - 2665412..2665720 (-) 309 WP_193737698.1 antibiotic biosynthesis monooxygenase -
  JNUCC6_RS13150 (JNUCC6_13150) - 2665722..2666702 (-) 981 WP_193737699.1 siderophore ABC transporter substrate-binding protein -
  JNUCC6_RS13155 (JNUCC6_13155) - 2666722..2667483 (-) 762 WP_038186197.1 ABC transporter ATP-binding protein -
  JNUCC6_RS13160 (JNUCC6_13160) - 2667480..2668430 (-) 951 WP_193737700.1 iron chelate uptake ABC transporter family permease subunit -
  JNUCC6_RS13165 (JNUCC6_13165) ceuB 2668423..2669373 (-) 951 WP_193737701.1 ABC transporter permease Machinery gene
  JNUCC6_RS13170 (JNUCC6_13170) - 2669747..2671234 (-) 1488 WP_193737702.1 peptide MFS transporter -
  JNUCC6_RS13175 (JNUCC6_13175) - 2671463..2673181 (+) 1719 WP_193737703.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34755.02 Da        Isoelectric Point: 10.0208

>NTDB_id=494302 JNUCC6_RS13165 WP_193737701.1 2668423..2669373(-) (ceuB) [Viridibacillus sp. JNUCC-6]
MKKRYLFIALILLSLISLFVGVSRISPTDLLDFESEETQIFLISRLPRLVAIILAGMGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGILVSMLLFANASLIEKMAVSFVFALAGTLLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYKADVI
QNISSWLQGDFSMVMKGRYELLYISVPILIIAYLYANRFTVAGMGEDFSKNLGLAYKRIVNFGLILVALVTTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLACDILGRILIYPYEISISLMVGVIGSGVFLYMLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=494302 JNUCC6_RS13165 WP_193737701.1 2668423..2669373(-) (ceuB) [Viridibacillus sp. JNUCC-6]
ATGAAGAAACGATACCTTTTTATAGCACTTATCTTGTTATCATTAATATCGCTTTTTGTGGGAGTGAGCCGAATCTCTCC
GACAGATTTGCTAGATTTTGAATCTGAAGAAACTCAAATCTTCTTAATTAGTCGTTTACCTAGACTAGTAGCCATCATTT
TAGCTGGTATGGGAATGAGTATAGCAGGTTTGATCATGCAAAGTTTAAGTAGAAATAAATTTGTGTCGCCAACAACTGCA
GGTACATTAGATGCCACTAAGCTAGGCATACTAGTATCGATGTTACTGTTTGCGAATGCATCTTTGATTGAAAAAATGGC
GGTTTCATTTGTATTTGCGCTAGCCGGCACGCTTTTATTTATGCAAATTTTAAATCGTATTAAATTCAAGGATGCCATTT
TTATTCCACTTGTTGGATTAATGTTCGGTAATATTTTGTCGTCTATCACGACGTTTTTCGCTTATAAAGCGGATGTCATT
CAAAATATATCTTCGTGGTTACAAGGTGATTTCTCTATGGTTATGAAGGGGCGTTATGAACTTCTATACATAAGTGTACC
TATATTAATCATCGCTTATTTATATGCGAACCGATTTACGGTTGCGGGTATGGGTGAAGATTTCTCAAAAAATCTTGGCC
TTGCTTATAAAAGAATCGTTAACTTTGGTTTAATCCTCGTGGCACTCGTTACAACAACCGTTGTGCTAACGGTTGGAATG
ATACCTTTCCTTGGTTTAATCATTCCGAACATTGTATCGATCTTCAAGGGAGATCATTTACAAAAAACACTTCCGCATAC
CGCATTATTAGGTGCAATTTTCTTATTAGCCTGCGATATTCTAGGCAGGATATTGATTTATCCATATGAGATTTCAATTA
GCTTAATGGTTGGGGTAATTGGTAGTGGCGTCTTCCTATACATGTTATTTAGGGGGAAGGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.094

97.152

0.516