Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JNUCC6_RS07360 Genome accession   NZ_CP063302
Coordinates   1488595..1490295 (-) Length   566 a.a.
NCBI ID   WP_193740348.1    Uniprot ID   A0A7M2QZ01
Organism   Viridibacillus sp. JNUCC-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1483595..1495295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC6_RS07345 (JNUCC6_07345) - 1483895..1485526 (-) 1632 WP_227752107.1 DUF342 domain-containing protein -
  JNUCC6_RS07350 (JNUCC6_07350) spo0A 1486318..1487109 (-) 792 WP_038184908.1 sporulation transcription factor Spo0A -
  JNUCC6_RS07355 (JNUCC6_07355) - 1487460..1488416 (-) 957 WP_193740347.1 SpoIVB peptidase S55 domain-containing protein -
  JNUCC6_RS07360 (JNUCC6_07360) recN 1488595..1490295 (-) 1701 WP_193740348.1 DNA repair protein RecN Machinery gene
  JNUCC6_RS07365 (JNUCC6_07365) ahrC 1490312..1490761 (-) 450 WP_193740349.1 transcriptional regulator AhrC/ArgR -
  JNUCC6_RS07370 (JNUCC6_07370) - 1490864..1491685 (-) 822 WP_193740350.1 TlyA family RNA methyltransferase -
  JNUCC6_RS07375 (JNUCC6_07375) dxs 1491685..1493592 (-) 1908 WP_193740351.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JNUCC6_RS07380 (JNUCC6_07380) - 1493684..1494568 (-) 885 WP_193740352.1 polyprenyl synthetase family protein -
  JNUCC6_RS07385 (JNUCC6_07385) - 1494565..1494807 (-) 243 WP_193740353.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63645.26 Da        Isoelectric Point: 4.9064

>NTDB_id=494290 JNUCC6_RS07360 WP_193740348.1 1488595..1490295(-) (recN) [Viridibacillus sp. JNUCC-6]
MLRELSIKNFAIIEDLTVGFVEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELEGLFGISSENHSAYQK
CAEAGIEIEEGMVILRRDLNDNGKSVCRVNGKLVPLSILREIGATLIDVHGQHESQELMDDKRHISLLDQFAGADIDPLK
ERYSEEYSAYRELKKELAAISLGEQQVAQKIDLFSFQIKEIDACQFRAGEEEELAEERRRLMNFNKIYERSNTAHEAILG
ESRGLDWIGQAMTDLEEVATLDQDFREHSDNVSAAFYSLQEAAFQIKNILDDLEFNPERLNEVEQRLALIQSMKRKYGAT
LEDILTYREKIGEELESLINRDENMQKNEQQLNDLKEKLLLTAEKLTEVRKKSGRKLSDAIMHQLRALYMEKADFSVHFE
PIAADQFDHNGLDRIVFYIATNVGEPPKPLTKIASGGELSRMMLALKTIFSSTNGITSIIFDEVDTGVSGRVAQAIAEKI
SAISMHSQVLCISHLPQVAAMADHHYYIKKHEEAHRTVTSLTEIFDNARIDEISRMMSGAEVTELTFQHAKELVEIANGR
KKAMTI

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=494290 JNUCC6_RS07360 WP_193740348.1 1488595..1490295(-) (recN) [Viridibacillus sp. JNUCC-6]
TTGTTACGAGAACTATCGATTAAAAATTTTGCAATTATTGAAGACTTAACAGTAGGTTTTGTTGAAGGATTAACTGTTTT
AACAGGTGAAACAGGTGCCGGAAAATCAATTATTATTGATGCGGTACAGCTATTAGCTGGTGGTCGAGGTTCTCAGGAAT
TCATCCGTCACGGTGCTAAAAAAGCCGAGCTTGAAGGACTCTTTGGGATTTCTTCTGAAAACCACTCTGCTTACCAAAAA
TGTGCAGAAGCTGGGATTGAAATTGAAGAGGGAATGGTTATTTTACGTCGTGATTTAAATGACAATGGGAAAAGTGTTTG
TCGTGTTAATGGAAAACTTGTTCCACTTTCCATTTTGCGTGAAATAGGCGCAACATTAATAGATGTTCATGGCCAGCATG
AAAGCCAAGAGTTAATGGATGATAAGAGACATATCTCCTTGTTAGATCAGTTTGCAGGTGCAGACATTGATCCATTGAAA
GAACGTTATAGTGAGGAATACTCTGCTTATCGTGAATTGAAAAAGGAACTTGCTGCAATTTCTCTTGGTGAACAGCAAGT
AGCACAAAAAATTGACCTTTTTTCATTTCAAATTAAAGAAATTGACGCTTGCCAATTTCGAGCAGGAGAAGAAGAAGAAC
TAGCTGAAGAACGTCGTAGGTTGATGAACTTCAATAAGATCTATGAACGATCCAATACGGCACACGAAGCCATTCTGGGT
GAATCTAGAGGACTTGATTGGATTGGGCAAGCTATGACCGATCTTGAAGAAGTTGCTACATTGGATCAAGATTTTAGAGA
GCATTCAGATAATGTATCAGCTGCCTTTTATTCTTTACAAGAAGCAGCATTTCAAATAAAAAACATATTAGATGACCTTG
AATTCAACCCGGAGCGTTTGAACGAAGTAGAGCAACGTTTAGCTTTAATCCAATCGATGAAGCGTAAATACGGTGCTACA
CTTGAGGACATACTAACTTATCGTGAAAAAATTGGAGAAGAACTGGAATCTCTAATCAATCGTGATGAAAATATGCAAAA
AAACGAACAACAACTAAATGATTTGAAAGAAAAGTTACTGCTAACAGCAGAAAAACTAACCGAAGTTCGAAAAAAATCCG
GTCGAAAACTAAGCGATGCCATTATGCACCAACTACGAGCGTTATATATGGAAAAAGCAGACTTTAGTGTACATTTTGAA
CCTATAGCTGCAGATCAATTCGATCATAATGGTTTAGATCGTATTGTATTCTATATTGCAACCAATGTTGGTGAACCACC
GAAGCCTTTAACAAAAATTGCATCTGGTGGGGAATTATCTCGTATGATGCTAGCTTTAAAAACGATTTTCTCTTCAACAA
ATGGTATTACATCAATTATTTTTGATGAAGTAGATACAGGCGTCAGCGGGCGTGTTGCTCAAGCAATTGCTGAAAAAATT
TCAGCTATTTCAATGCATTCACAAGTGCTTTGTATTTCACATTTACCACAAGTTGCAGCGATGGCTGATCATCATTATTA
TATTAAGAAACATGAAGAAGCGCATCGAACAGTGACATCACTCACTGAAATATTTGATAATGCGCGAATCGATGAAATTA
GCCGAATGATGTCTGGCGCAGAAGTGACAGAGTTAACATTCCAACATGCAAAAGAATTGGTAGAAATAGCTAACGGTCGA
AAAAAAGCAATGACCATTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M2QZ01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.489

100

0.519