Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IM723_RS02250 Genome accession   NZ_CP063275
Coordinates   411663..412106 (+) Length   147 a.a.
NCBI ID   WP_211836962.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain DMST-H2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 406663..417106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS02230 - 407178..407939 (-) 762 Protein_377 NUDIX hydrolase -
  IM723_RS02235 - 408003..409108 (-) 1106 Protein_378 AAA family ATPase -
  IM723_RS02240 gdhA 409452..410804 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  IM723_RS02245 - 411062..411472 (+) 411 WP_011225559.1 peptide deformylase -
  IM723_RS02250 rcrR 411663..412106 (+) 444 WP_211836962.1 MarR family transcriptional regulator Regulator
  IM723_RS02255 rcrP 412110..413924 (+) 1815 WP_211836963.1 ABC transporter ATP-binding protein Regulator
  IM723_RS02260 rcrQ 413914..415692 (+) 1779 WP_211836964.1 ABC transporter ATP-binding protein Regulator
  IM723_RS02265 - 415848..416219 (+) 372 WP_232981380.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17091.51 Da        Isoelectric Point: 9.5790

>NTDB_id=494151 IM723_RS02250 WP_211836962.1 411663..412106(+) (rcrR) [Streptococcus thermophilus strain DMST-H2]
MHGKDPFSDFREFINTMEFRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=494151 IM723_RS02250 WP_211836962.1 411663..412106(+) (rcrR) [Streptococcus thermophilus strain DMST-H2]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAGTTCATCAATACTATGGAGTTTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537