Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IHJ55_RS18885 Genome accession   NZ_CP063242
Coordinates   4280750..4282132 (+) Length   460 a.a.
NCBI ID   WP_203470469.1    Uniprot ID   -
Organism   Pectobacterium carotovorum strain XP-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4275750..4287132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHJ55_RS18865 (IHJ55_18870) prfC 4276055..4277644 (-) 1590 WP_039507387.1 peptide chain release factor 3 -
  IHJ55_RS18870 (IHJ55_18875) - 4277938..4278846 (+) 909 WP_203470467.1 hypothetical protein -
  IHJ55_RS18875 (IHJ55_18880) - 4278901..4279599 (-) 699 WP_010296287.1 YtjB family periplasmic protein -
  IHJ55_RS18880 (IHJ55_18885) serB 4279755..4280732 (+) 978 WP_203470468.1 phosphoserine phosphatase -
  IHJ55_RS18885 (IHJ55_18890) radA 4280750..4282132 (+) 1383 WP_203470469.1 DNA repair protein RadA Machinery gene
  IHJ55_RS18890 (IHJ55_18895) nadR 4282250..4283503 (+) 1254 WP_010296277.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IHJ55_RS18895 (IHJ55_18900) - 4283500..4284147 (-) 648 WP_203470470.1 5-formyltetrahydrofolate cyclo-ligase -
  IHJ55_RS18905 (IHJ55_18910) zapA 4284445..4284774 (-) 330 WP_010284667.1 cell division protein ZapA -
  IHJ55_RS18910 (IHJ55_18915) - 4284967..4285554 (+) 588 WP_010296270.1 YecA family protein -
  IHJ55_RS18915 (IHJ55_18920) pepP 4285629..4286954 (+) 1326 WP_203470471.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49627.22 Da        Isoelectric Point: 7.4463

>NTDB_id=494130 IHJ55_RS18885 WP_203470469.1 4280750..4282132(+) (radA) [Pectobacterium carotovorum strain XP-13]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKVPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=494130 IHJ55_RS18885 WP_203470469.1 4280750..4282132(+) (radA) [Pectobacterium carotovorum strain XP-13]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCTCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGTCTGGCCTCGGCGTCGGTGTCACGTTCCGACCGTCTCACTGGCTATG
CGGGTGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATTAGTCTTGAAGCCCTGCCACGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGTGTCGTTCCGGGCAGTGCCATTCTGATCGGCGGTAACCCCGGTGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGTGAAGAATCAC
TACAGCAGGTAGCAATGCGGGCGCATCGTCTCAATCTGCCAACGCAGAATCTCAATATGCTGTCAGAAACCAGCATCGAA
CAGATTTGCCTGATCGCCGAGCAGGAACAGCCGAAACTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTCATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCGAAAGTCTTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCAGCGATTTTCCTCAGCCGCGGAGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTAGAAATTCAGGCGCTGGTAGATCAA
TCGATGATGGCTAACCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGAGTGAAAGTCACCGAAACCAGTGCCG
ATCTGGCGCTACTGCTATCGCTGGTCTCTAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGCGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCAGCCAAACACGGTTTCAAACGTGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGTCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGATGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

42.637

98.913

0.422
  radA Streptococcus pneumoniae D39

42.637

98.913

0.422
  radA Streptococcus pneumoniae R6

42.637

98.913

0.422
  radA Streptococcus pneumoniae TIGR4

42.637

98.913

0.422
  radA Streptococcus mitis NCTC 12261

42.637

98.913

0.422
  radA Streptococcus mitis SK321

42.637

98.913

0.422