Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SSAL_RS06405 Genome accession   NC_017594
Coordinates   1407926..1408228 (-) Length   100 a.a.
NCBI ID   WP_014633320.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1400878..1409584 1407926..1408228 within 0


Gene organization within MGE regions


Location: 1400878..1409584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS06385 (Ssal_01410) - 1400878..1402632 (-) 1755 WP_013990812.1 ATP-binding protein -
  SSAL_RS06390 (Ssal_01411) - 1402625..1403971 (-) 1347 WP_013990813.1 SIR2 family protein -
  SSAL_RS06395 (Ssal_01412) - 1404107..1404760 (-) 654 WP_013990814.1 hypothetical protein -
  SSAL_RS06400 (Ssal_01413) - 1404772..1407762 (-) 2991 WP_014633319.1 type I restriction endonuclease subunit R -
  SSAL_RS06405 (Ssal_01414) HI0659 1407926..1408228 (-) 303 WP_014633320.1 helix-turn-helix transcriptional regulator Machinery gene
  SSAL_RS06410 - 1408230..1408583 (-) 354 WP_045001823.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SSAL_RS06415 (Ssal_01416) - 1408820..1409584 (-) 765 WP_014633322.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10965.90 Da        Isoelectric Point: 10.0976

>NTDB_id=49408 SSAL_RS06405 WP_014633320.1 1407926..1408228(-) (HI0659) [Streptococcus salivarius 57.I]
MAREKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=49408 SSAL_RS06405 WP_014633320.1 1407926..1408228(-) (HI0659) [Streptococcus salivarius 57.I]
ATGGCTCGAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCTCAAAAGAAACTTG
AAGAGCTAAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACAGGTAAAACAGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCGAGTCTAGGTAAGACATTGGCGGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53

Multiple sequence alignment