Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IM816_RS13580 Genome accession   NZ_CP063231
Coordinates   3140207..3141361 (+) Length   384 a.a.
NCBI ID   WP_250338478.1    Uniprot ID   -
Organism   Luteibacter flocculans strain EIF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3135207..3146361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM816_RS13550 (IM816_13530) - 3135462..3136325 (-) 864 WP_250338475.1 MBL fold metallo-hydrolase -
  IM816_RS13555 (IM816_13535) ggt 3136336..3138036 (-) 1701 WP_250338476.1 gamma-glutamyltransferase -
  IM816_RS13560 (IM816_13540) - 3138100..3138357 (-) 258 WP_072321744.1 YfhL family 4Fe-4S dicluster ferredoxin -
  IM816_RS13565 (IM816_13545) - 3138521..3139024 (-) 504 WP_072322294.1 hypothetical protein -
  IM816_RS13570 (IM816_13550) coaD 3139043..3139546 (-) 504 WP_072321745.1 pantetheine-phosphate adenylyltransferase -
  IM816_RS13575 (IM816_13555) rsmD 3139573..3140142 (-) 570 WP_250338477.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IM816_RS13580 (IM816_13560) pilA 3140207..3141361 (+) 1155 WP_250338478.1 signal recognition particle-docking protein FtsY Machinery gene
  IM816_RS13585 (IM816_13565) - 3141391..3142446 (+) 1056 WP_250338479.1 membrane assembly protein AsmA -
  IM816_RS13590 (IM816_13570) mutY 3142443..3143489 (+) 1047 WP_250338480.1 A/G-specific adenine glycosylase -
  IM816_RS13595 (IM816_13575) - 3143486..3143764 (+) 279 WP_250338481.1 oxidative damage protection protein -
  IM816_RS13605 (IM816_13585) - 3144017..3144373 (-) 357 WP_250338482.1 hypothetical protein -
  IM816_RS13610 (IM816_13590) - 3144603..3145094 (-) 492 WP_250338483.1 nuclear transport factor 2 family protein -
  IM816_RS13615 (IM816_13595) - 3145242..3145478 (-) 237 WP_072321752.1 hypothetical protein -
  IM816_RS13620 (IM816_13600) - 3145475..3145663 (-) 189 WP_250338484.1 DUF3606 domain-containing protein -
  IM816_RS13625 (IM816_13605) - 3145735..3146205 (-) 471 WP_250338485.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 40627.17 Da        Isoelectric Point: 4.8510

>NTDB_id=493983 IM816_RS13580 WP_250338478.1 3140207..3141361(+) (pilA) [Luteibacter flocculans strain EIF3]
MLKFWKKKTTEPAPAESAATDERADLVADPASSAESGVATSEALAEAAAPEPQVPDIDAEVEASVVVEAAREAEHAPATP
ARRSWRERLSGSGFAKSLSALFVKNPRLDDDLLDELETALITADVGVDASTRLVEDLRKRMHKREFADADALLKALRSEL
VALLKPVETPLDVATASPFVILTVGINGVGKTTTIGKLARRYVDEGRNVILAAGDTFRAAAVEQLKTWGERNKVPVVSQG
QDADSASVIFDALQAARSRGAQVLIADTAGRLHTQGGLMDELGKIGRVMKKLDPSAPHEVLMVIDGTTGQNAISQVRQFR
ETAGVTGLVVTKLDGTAKGGVMFALAREFGLPIRYVGLGETATDLRVFDAEAFVDGLLPAALGG

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=493983 IM816_RS13580 WP_250338478.1 3140207..3141361(+) (pilA) [Luteibacter flocculans strain EIF3]
ATGCTCAAGTTCTGGAAAAAGAAGACCACCGAGCCGGCGCCGGCCGAGTCCGCGGCCACCGACGAGCGGGCTGACCTGGT
CGCCGATCCCGCGTCGTCCGCCGAGAGCGGCGTCGCCACCTCCGAAGCGCTGGCCGAGGCCGCTGCGCCGGAACCTCAGG
TGCCCGACATCGACGCCGAGGTCGAGGCCTCCGTCGTGGTCGAAGCCGCCCGTGAAGCCGAACATGCCCCGGCAACGCCG
GCACGACGTAGCTGGCGCGAACGTCTCTCGGGCAGCGGGTTCGCCAAGAGCCTTTCCGCGCTCTTCGTAAAGAATCCCCG
GCTCGACGACGACCTCCTCGACGAACTGGAAACCGCGTTGATCACGGCCGATGTGGGCGTGGACGCCAGCACGCGACTCG
TGGAAGACCTCCGCAAGCGCATGCACAAACGTGAGTTCGCCGACGCCGACGCATTGCTGAAGGCGCTGCGCAGCGAATTG
GTGGCGCTGCTGAAGCCGGTCGAGACGCCGCTCGACGTCGCCACCGCCAGCCCCTTCGTGATCCTGACCGTCGGCATCAA
TGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGCGCCGTTATGTCGATGAAGGCCGCAACGTCATCCTCGCCGCAG
GCGACACGTTCCGCGCCGCCGCGGTGGAACAGTTGAAGACCTGGGGTGAGCGCAACAAGGTGCCCGTGGTCTCGCAAGGC
CAGGACGCCGACTCCGCCAGTGTCATCTTCGATGCGCTGCAGGCGGCACGCTCGCGCGGCGCGCAGGTGCTGATCGCGGA
CACGGCAGGGCGCCTGCACACGCAGGGCGGCCTGATGGACGAGTTGGGCAAGATCGGCCGCGTGATGAAGAAACTCGATC
CCAGCGCACCGCACGAGGTGCTGATGGTCATCGACGGCACGACCGGGCAGAACGCCATCAGCCAGGTGCGTCAGTTCCGC
GAGACCGCAGGCGTTACCGGCCTGGTAGTCACCAAGCTCGACGGCACCGCAAAAGGCGGCGTGATGTTCGCCCTCGCCCG
CGAATTCGGCCTGCCGATCCGCTACGTGGGGCTGGGTGAAACCGCCACCGATCTGCGTGTGTTCGACGCAGAGGCCTTCG
TAGACGGCCTGCTCCCGGCGGCTCTCGGCGGTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(95-160)

SRP54-type protein, GTPase domain (SRP54)

(178-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.498

100

0.484