Detailed information NTG0493918

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KIM24_RS04940
• Genome accession: NZ_CP074859
• Coordinates: 956030..957022 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C_3964
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 951030..962022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIM24_RS04910 (KIM24_04885)	ygbM	951302..952078 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KIM24_RS04915 (KIM24_04890)	ygbN	952167..953531 (+)	1365	WP_000104439.1	GntP family transporter	-
KIM24_RS04920 (KIM24_04895)	-	953570..953806 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
KIM24_RS04925 (KIM24_04900)	-	953817..954071 (-)	255	Protein_961	hypothetical protein	-
KIM24_RS04930 (KIM24_04905)	-	954160..954525 (+)	366	WP_032345630.1	hypothetical protein	-
KIM24_RS04935 (KIM24_04910)	-	954525..955712 (+)	1188	WP_000937595.1	IS91 family transposase	-
KIM24_RS04940 (KIM24_04915)	rpoS	956030..957022 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KIM24_RS04945 (KIM24_04920)	nlpD	957085..958179 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KIM24_RS04950 (KIM24_04925)	pcm	958364..958990 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KIM24_RS04955 (KIM24_04930)	surE	958984..959745 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KIM24_RS04960 (KIM24_04935)	truD	959726..960775 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
KIM24_RS04965 (KIM24_04940)	ispF	960772..961251 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KIM24_RS04970 (KIM24_04945)	ispD	961251..961961 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=493918 KIM24_RS04940 WP_000081550.1 956030..957022(-) (rpoS) [Escherichia coli strain 2013C_3964]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=493918 KIM24_RS04940 WP_000081550.1 956030..957022(-) (rpoS) [Escherichia coli strain 2013C_3964]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715