Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IL987_RS00775 Genome accession   NZ_CP063214
Coordinates   163905..164534 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ERP001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 158905..169534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL987_RS00755 ycbZ 159307..161067 (-) 1761 WP_000156498.1 Lon protease family protein -
  IL987_RS00760 matP 161253..161705 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  IL987_RS00765 ompA 161781..162821 (-) 1041 WP_001313715.1 porin OmpA -
  IL987_RS00770 sulA 163177..163686 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  IL987_RS00775 sxy/tfoX 163905..164534 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IL987_RS00780 yccS 164497..166659 (-) 2163 WP_000875040.1 YccS family putative transporter -
  IL987_RS00785 yccF 166669..167115 (-) 447 WP_001261236.1 YccF domain-containing protein -
  IL987_RS00790 helD 167238..169292 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=493877 IL987_RS00775 WP_000839153.1 163905..164534(+) (sxy/tfoX) [Escherichia coli strain ERP001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=493877 IL987_RS00775 WP_000839153.1 163905..164534(+) (sxy/tfoX) [Escherichia coli strain ERP001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1