Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INR75_RS05705 Genome accession   NZ_CP063204
Coordinates   1282355..1283719 (-) Length   454 a.a.
NCBI ID   WP_223091128.1    Uniprot ID   -
Organism   Zunongwangia sp. SCSIO 43204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277355..1288719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR75_RS05685 (INR75_05685) - 1278236..1278997 (+) 762 WP_092540037.1 exodeoxyribonuclease III -
  INR75_RS05690 (INR75_05690) - 1279013..1279963 (+) 951 WP_092540038.1 OmpA family protein -
  INR75_RS05695 (INR75_05695) - 1280103..1281140 (+) 1038 WP_223091126.1 NADP(H)-dependent aldo-keto reductase -
  INR75_RS05700 (INR75_05700) - 1281186..1282310 (-) 1125 WP_255584653.1 M23 family metallopeptidase -
  INR75_RS05705 (INR75_05705) radA 1282355..1283719 (-) 1365 WP_223091128.1 DNA repair protein RadA Machinery gene
  INR75_RS05710 (INR75_05710) - 1283734..1284882 (-) 1149 WP_223091129.1 alpha/beta hydrolase -
  INR75_RS05715 (INR75_05715) - 1284916..1285881 (-) 966 WP_223091130.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  INR75_RS05720 (INR75_05720) panD 1285893..1286243 (-) 351 WP_092540044.1 aspartate 1-decarboxylase -
  INR75_RS05725 (INR75_05725) panC 1286249..1287100 (-) 852 WP_223091131.1 pantoate--beta-alanine ligase -
  INR75_RS05730 (INR75_05730) - 1287211..1288023 (+) 813 WP_223091132.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50016.39 Da        Isoelectric Point: 6.7515

>NTDB_id=493860 INR75_RS05705 WP_223091128.1 1282355..1283719(-) (radA) [Zunongwangia sp. SCSIO 43204]
MAKVKTAYYCQNCGAQYSKWQGRCNSCGDWNTIVEEIVEKPDKKAWKSSAKTEAKRVAKPLRLNEIETAPQYRWKTGNNE
LDRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLSFPYKVLYVSGEESQQQIKMRAERIDPNSTNCYILTETKTQNIFRQ
IEEVSPEVVIIDSIQTLHSDYIESAPGSISQIRETTSELIKFAKESNVPVILIGHITKEGSIAGPKVLEHMVDTVLQFEG
DRNHVYRILRSHKNRFGSTHELGIYEMQGSGLREVSNPSEILISKNDEDLSGTAIASTLEGMRPLMIEIQALVSTAVYGT
PQRSATGYNVKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIAIEKDICFAAEVGLAGE
IRPVTRVDQRILEAEKLGFAKIVISKQSKLPKTSYTIEVIKVSKIEDVVSQLFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=493860 INR75_RS05705 WP_223091128.1 1282355..1283719(-) (radA) [Zunongwangia sp. SCSIO 43204]
ATGGCGAAGGTAAAAACAGCATATTATTGCCAAAATTGTGGCGCGCAGTATTCTAAATGGCAGGGACGTTGTAATTCTTG
CGGAGACTGGAATACGATAGTTGAAGAAATTGTTGAAAAACCAGACAAAAAAGCCTGGAAATCTTCAGCAAAAACCGAAG
CAAAACGTGTTGCTAAACCTTTGCGTTTAAATGAAATTGAAACCGCTCCACAATACCGCTGGAAGACCGGAAATAACGAA
TTAGATCGTGTTTTAGGAGGCGGACTCGTGCCCGGCTCCTTAACACTTCTTGGCGGTGAACCGGGTATTGGAAAAAGTAC
ACTTCTACTTCAAATTTCGTTAAGTTTCCCTTACAAAGTTTTATACGTTTCAGGAGAGGAAAGCCAGCAGCAAATAAAAA
TGCGGGCAGAGCGTATCGACCCAAATTCGACAAACTGCTATATCCTTACAGAGACCAAAACGCAAAATATCTTTAGGCAA
ATTGAAGAGGTTTCTCCGGAAGTAGTGATCATCGATTCGATTCAAACATTACATAGTGATTATATTGAAAGCGCACCCGG
AAGTATTTCTCAAATTCGCGAAACTACATCTGAATTAATAAAGTTCGCTAAAGAAAGTAATGTGCCTGTAATACTAATAG
GCCATATCACCAAAGAAGGAAGTATTGCCGGGCCTAAGGTTTTAGAGCACATGGTAGACACCGTGCTTCAATTCGAAGGT
GATCGCAATCATGTATACCGAATTCTTCGTTCTCATAAAAACCGTTTTGGAAGTACTCACGAACTGGGGATTTACGAAAT
GCAGGGCAGCGGATTGCGTGAAGTAAGTAATCCTTCAGAAATATTAATTAGCAAAAACGACGAAGATCTAAGTGGCACCG
CCATCGCCAGTACTTTAGAAGGCATGCGCCCGTTGATGATCGAAATTCAGGCGCTAGTGAGCACCGCCGTTTATGGTACT
CCGCAGCGATCTGCAACCGGTTATAATGTAAAGCGACTAAATATGCTTTTGGCTGTTTTAGAGAAACGTGCAGGCTTTAA
ATTGGGCGCAAAAGATGTTTTTTTAAATATTACCGGCGGAATTAGCGTAGACGATCCTGCGATCGATCTGGCCGTTGTTG
CTGCTATTTTATCGTCTAACGAGGATATTGCGATCGAGAAAGATATTTGTTTTGCTGCTGAAGTTGGTTTGGCAGGAGAA
ATTAGACCGGTAACCAGAGTAGATCAACGAATTTTAGAAGCCGAAAAACTTGGTTTCGCTAAGATTGTGATTTCTAAACA
AAGTAAACTTCCAAAAACTTCTTATACTATTGAAGTGATCAAAGTTTCTAAGATTGAAGATGTTGTGAGTCAGCTTTTCG
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-220)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

49.348

100

0.5
  radA Streptococcus pneumoniae Rx1

49.348

100

0.5
  radA Streptococcus pneumoniae D39

49.348

100

0.5
  radA Streptococcus pneumoniae TIGR4

49.348

100

0.5
  radA Streptococcus mitis NCTC 12261

49.234

100

0.496
  radA Streptococcus mitis SK321

49.234

100

0.496
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.493