Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INR76_RS03125 Genome accession   NZ_CP063203
Coordinates   679078..680439 (+) Length   453 a.a.
NCBI ID   WP_223109204.1    Uniprot ID   -
Organism   Marixanthomonas sp. SCSIO 43207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 674078..685439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR76_RS03105 (INR76_03105) - 674196..675161 (+) 966 WP_223109200.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  INR76_RS03110 (INR76_03110) - 675225..676373 (+) 1149 WP_223109201.1 alpha/beta hydrolase -
  INR76_RS03115 (INR76_03115) - 676370..677017 (-) 648 WP_223109202.1 response regulator transcription factor -
  INR76_RS03120 (INR76_03120) - 677017..679029 (-) 2013 WP_223109203.1 sensor histidine kinase -
  INR76_RS03125 (INR76_03125) radA 679078..680439 (+) 1362 WP_223109204.1 DNA repair protein RadA Machinery gene
  INR76_RS03130 (INR76_03130) - 680473..681603 (+) 1131 WP_223109205.1 peptidoglycan DD-metalloendopeptidase family protein -
  INR76_RS03135 (INR76_03135) - 681671..683035 (+) 1365 WP_223109206.1 acyl-CoA dehydrogenase family protein -
  INR76_RS03140 (INR76_03140) - 683032..683985 (-) 954 WP_223109207.1 OmpA family protein -
  INR76_RS03145 (INR76_03145) - 684004..684768 (-) 765 WP_223109208.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49434.96 Da        Isoelectric Point: 8.1657

>NTDB_id=493846 INR76_RS03125 WP_223109204.1 679078..680439(+) (radA) [Marixanthomonas sp. SCSIO 43207]
MAKTKTTFFCQNCGAQYSKWQGKCTSCGEWNTIAEEVIQKAEKVSWKPSSATAKRAAKPLRVSEISAVSEARMNTKNNEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLMLQVALQLPYKTLYVSGEESAQQIKMRAERIQPVSENCFILTETKTQNIFRNI
EETEPDIVVIDSIQTLHTDHIESSAGSISQIRETTTELIKFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSHKNRFGSTNELGIYEMQGSGLREVSNPSEILISKNEEDLSGTAIAATLEGMRPLMIEIQALVSSAVYGTP
QRSATGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNVTGGISVDDPAIDLAVVAAVLSSNIDVAIDKSLCFAAEVGLAGEV
RPVTRVEQRILEAEKLGFGSIIVSKHCKFPKLKFTINIIKVAKVHDVVRHLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=493846 INR76_RS03125 WP_223109204.1 679078..680439(+) (radA) [Marixanthomonas sp. SCSIO 43207]
ATGGCAAAAACCAAAACCACTTTTTTCTGTCAAAACTGCGGCGCACAATATTCAAAATGGCAAGGCAAATGTACGTCTTG
CGGTGAGTGGAATACAATTGCCGAAGAAGTTATTCAAAAAGCTGAAAAAGTAAGCTGGAAACCTTCTTCAGCTACAGCAA
AACGTGCTGCCAAACCGTTACGTGTTTCTGAAATCTCTGCCGTTTCAGAAGCAAGGATGAATACCAAAAACAATGAACTT
AATCGTGTTTTGGGCGGTGGTCTCGTTCCCGGTTCGTTAACGCTTTTAGGCGGCGAGCCCGGTATAGGAAAAAGTACGTT
GATGCTGCAAGTTGCTTTACAACTACCATACAAAACACTGTATGTTTCTGGTGAAGAAAGCGCACAACAAATTAAAATGC
GTGCAGAACGCATACAACCGGTTTCAGAAAACTGCTTTATTCTTACCGAAACAAAAACACAAAATATTTTCAGAAATATT
GAAGAAACCGAACCCGACATTGTTGTTATTGATTCTATTCAAACCTTGCATACCGATCATATTGAAAGCAGCGCAGGAAG
TATCTCGCAAATAAGAGAAACCACCACAGAGCTTATTAAGTTTGCAAAAGAAACCGCAACCCCGGTCATTTTGATTGGGC
ATATTACTAAAGACGGTAACATTGCCGGTCCCAAAATTTTGGAACACATGGTTGACACCGTTTTACAGTTTGAAGGCGAT
AGAAATCACGTATACCGTATTCTTAGATCCCATAAAAATCGTTTTGGAAGTACAAACGAACTAGGAATTTATGAAATGCA
AGGAAGCGGATTAAGAGAGGTGTCAAATCCTTCAGAAATATTAATTTCAAAAAACGAAGAAGATCTTAGCGGTACCGCCA
TTGCAGCAACTCTAGAAGGCATGCGCCCCTTGATGATTGAAATTCAAGCGTTGGTTAGTTCTGCCGTTTACGGAACACCA
CAACGAAGCGCAACCGGTTATAATGCGAAGCGCTTAAATATGTTATTGGCTGTTTTAGAAAAACGTGCCGGCTTTAAACT
AGGTGCAAAAGATGTATTTTTAAATGTCACTGGCGGAATTTCGGTTGATGATCCTGCTATAGATTTAGCTGTCGTTGCCG
CTGTGCTTTCTTCAAATATTGATGTAGCGATCGACAAATCATTATGTTTTGCTGCAGAAGTTGGTTTAGCCGGAGAAGTT
AGACCTGTCACACGCGTAGAACAACGTATTCTTGAAGCTGAAAAATTAGGTTTTGGAAGTATTATAGTATCCAAACACTG
CAAATTTCCGAAGCTAAAATTTACAATCAACATTATTAAAGTAGCCAAGGTTCACGATGTTGTGAGGCATTTATTTGGGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-425)

AAA domain (AAA_25)

(63-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.345

100

0.499
  radA Streptococcus pneumoniae Rx1

47.38

100

0.479
  radA Streptococcus pneumoniae D39

47.38

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.38

100

0.479
  radA Streptococcus pneumoniae R6

47.38

100

0.479
  radA Streptococcus mitis NCTC 12261

47.38

100

0.479
  radA Streptococcus mitis SK321

47.265

100

0.477